Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21390 1261 / 0 Coatomer, alpha subunit (.1) AT1G62020 1260 / 0 Coatomer, alpha subunit (.1) AT3G15980 163 / 6e-41 Coatomer, beta' subunit (.1.2.3.4.5) AT1G52360 159 / 1e-39 Coatomer, beta' subunit (.1.2) AT1G79990 156 / 9e-39 structural molecules (.1.2.3.4.5) AT3G49660 91 / 2e-19 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 83 / 5e-16 TAF5 TBP-associated factor 5 (.1) AT5G16750 78 / 2e-14 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT4G02730 76 / 2e-14 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 78 / 3e-14 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025780 [exp] 1977 / 0 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1) Lus10011454 [exp] 1329 / 0 AT1G62020 2098 / 0.0 Coatomer, alpha subunit (.1) Lus10040752 [exp] 1326 / 0 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1) Lus10016481 [exp] 1325 / 0 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1) Lus10037538 [exp] 1205 / 0 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1) Lus10037539 [exp] 522 / 5e-177 AT1G62020 594 / 0.0 Coatomer, alpha subunit (.1) Lus10033092 [exp] 166 / 9e-42 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10011467 [exp] 159 / 2e-39 AT1G52360 1505 / 0.0 Coatomer, beta' subunit (.1.2) Lus10039636 [exp] 95 / 8e-21 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G074800 [exp] 1308 / 0 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.015G069700 [exp] 1298 / 0 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.003G056300 [exp] 163 / 5e-41 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.001G179200 [exp] 160 / 6e-40 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.006G250200 [exp] 91 / 3e-19 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.007G009500 [exp] 89 / 5e-19 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 89 / 7e-19 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 86 / 1e-17 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 82 / 1e-15 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.013G079600 [exp] 81 / 3e-15 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF06957 [flax] [poplar] COPI_C Coatomer (COPI) alpha subunit C-terminus CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] Beta_propeller PF04053 [flax] [poplar] Coatomer_WDAD Coatomer WD associated region
Representative CDS sequence Show only first row Show all	>Lus10035883 pacid=23141091 polypeptide=Lus10035883 locus=Lus10035883.g ID=Lus10035883.BGIv1.0 annot-version=v1.0 ATGTCTTTGCAATTGATTTCCCCTATCCGCATTGGGAACTGGCAGTCACGTACTTGCATCTCTGTACTGACTGGCCATAATCATTATGTTATGTGTGCCT CATTCCATCCTAAAGAAGATCTTGTCGTGTCAGCTTCTCTGGACCAGACTGTCCGTGTTTGGGACACTAGTGCACTGAGAAAGAAGTCTGTCTCTCCTGC TGATGATATCATGCGTCTTAGTCAGTTAAATGGAGATCTTTTTGGTGGCGTTGATGCAGTTGTTAAGTATGTATTGGAAGGTCATGACCGTGGAGTAAAC TGGGCTTCGTTCCATCCCACACTTCCTTTGATTGTCTCCGGAGCTGATGATCGTCAAGTGAAGTTGTGGCGTATGAATGATACAAAGGCTTGGGAAGTGG ACACTTTGAGAGGGCACATGAACAATGTTTCATGTGTCATGTTTCATGCTAAGCAAGACATAATTGTGTCTAATTCAGAGGATAAGAGTATTCGAGTTTG GGATTTAACCAAGAGAACTGGGCTTCAAACTTTCCGTCGTGAGCATGATCGGTTCTGGATCCTTGCAGCTCACCCCGAAATCAATCTTCTTGCTGCTGGT CATGATAATGGGGTGATTGTGTTTAAGTTAGAGAGAGAAAGGCCTGCATTTGCTGTGAGCGGAGACTCTCTGTTTTTCACAAAGGACAGGTTTCTGCGGT ACTTTGAGTACTCTAGTCAGAAGGAAAACCAGGTGATTCCCATCAGACGACCTGGTAGTACTAGTCTGAATCAGAGTCCAAGAACTGTTTCTTATAGCCC TACAGAAAATGCAGTTCTGTTGTGTTCAGACATTGATGGGGGGTCATATGAGCTCTATATCATTCAAAAGGATAGTATTTCAAGGGGTGATACTGTACAA GAAGCAAAGAAAGGGGCAGGGGGTTCAGCTGTCTTCATAGCTCGAAATAGGTTTGCTGTTCTTGACAAAAGCAGCAATCAAGTGTTGGTCAAGAACCTAA AGAATGAGGTTGTCAAAAAGAGTGGTCTTCCCATTGTTACAGATGCAATATTTTATGCTGGGACTGGTAATGTGCTGTGTAGGGCCGAGGATAGGGTAGT TATTTTTGATCTTCAACAGAGACTTGTACTCGGGGATCTTCCAACACCTTTTGTGAAGTATGTTGTCTGGTCTAATGATATGGAGACTGTTGCCTTACTG AGCAAGCATGCCATTATCATAGGAAATAAGAAGCTTGTGCATCAGTGCACTCTTCATGAGACAATCCGTGTTAAAAGTGGAGCCTGGGATGACAATGGAA TTTTCATATATTCTACTTTAAATCACATGAAGTATTGTCTTCCAAATGGAGATAGTGGTATAATCAGAACCCTTGATGTCCCAATATACATTACCAAGGT TTCTGGCAATACAATCTATTGCCTGGATAGAGAAGGAAAAAATAGAAGTATTGTCATCGATCCCACAGAATATATGTTCAAACTTTCTCTTTTGAAGAAG AGATACGATCATGTTATGAGCATGATTAGGAACTCACAGCTGTGTGGGCAGGCTATGATTGCATATTTGCAGCAGAAGGGATTCCCAGAAGTTGCTTTGC ACTTTGTCAAGGATGAAAGAACTAGATTTAATTTGGCTCTTGAGAGTGGGAACATACAGATTGCTGTTGCTTCAGCTAAGGAAATAGATGAGAAAGATCA TTGGTACAGGCTAGGGGTGGAAGCTCTTCGGCAAGGGAATGCAGGTATTGTGGAGTACGCCTATCAGAGAACACAAAATTTTGAGAGGTTATCTTTCTTG TATCTGATTACGGGTAATCTAGACAAGTTGTCGAAGATGTTGAAAATTGCGGAGGTTAAGGGTGACGTCATGGGCCAGTTTCACAATGCCCTCTATTTGG GTGACATTCAGGAGCGTGTTAAAATGTTGGAAACTGCTGGACAAATACCCCTGGCATACATCACAGCTAAAGTACATGGTTTGGTGGACGTAGTGGATCG CCTAGCGGCTGATTTAGGAGATGATATTCCATCTTTGCCCGAGGGTAAAGTTCCATCTCTTCTGATGCCTCCGACCCCGATCATGTGTTCTGGCGATTGG CCCCTGACCCAGGGCTTCCGTCAGAAGTTCAGTTTTGGTGGCTCCAACTCCCGGCATGCCTCTGGGAATTTCGATACTGCTATGAGATTGCTCCATAGGC AACTTGGAATTAAGAATTTTACTCCGCTGAAATCTATGTTCCTCGATCTTCATACAGGAAGCCAGTCTTATTTGCGCGCAATGTCAGCCACTTCGGTGAT AGCACTGGCGGTCGAAAGATGGAATGAGTCTGCAAGCCCCAATGTGAGAGGCGCTCCATCACTGGTATTCAGCTTTGGTCAGTTGGAAGAAAAGCTAAAG GCTGGTTACAAAGCCACCACGGTTGGGAAAATTACAGAGGCGCTCAACAACTTTGTCAGCATTCTTCACACAATCCCTCTGATAGTTGTGGAGTCGAGAA GAGAGGTTGATGAAGTTAAAGAGTTGGTTATCATAGTGAAGGAGTACGTTGTGGGGCTACAGATGGAACTGAAGAGGAGGGAAATAAAAGACGAACCAGT TCGTCAACAGGAGCTTGCTGCCTACTTCACACATTGCAACCTTCAAACCCCTCACTTAAGATTAGCATTGCTGAATGCAATGTCAGTCTGTTACAAGGGA AAGAACTATGCTACAGCTGGTAACTTTGCCAGGCGTCTACTGGAAACAAACCCACAGAATCAAGAGCATGCAAAGAAGGCAAGACAAGTTCTGCAGGCTT CAGAGAAGAATATGACTGATGCTACAGAGCTGAAGTACGATTACAGGAATCCGTTTGTAGTTTGCGGGGCTACTTACGTTCCGATATATCGGGGGCAAAA GGATGTGTCTTGCCCATACTGTTCAGCTCGGTTTGTTCCGGAGCAGCAGGGGGGAATATGCCGAGTGTGCGATCTTGCAGTTGTTGGTGCAGATGCTTCA GGTCTGATCTGTTCATCTACCCAGATACGATAA
AA sequence Show only first row Show all	>Lus10035883 pacid=23141091 polypeptide=Lus10035883 locus=Lus10035883.g ID=Lus10035883.BGIv1.0 annot-version=v1.0 MSLQLISPIRIGNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDTSALRKKSVSPADDIMRLSQLNGDLFGGVDAVVKYVLEGHDRGVN WASFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDLTKRTGLQTFRREHDRFWILAAHPEINLLAAG HDNGVIVFKLERERPAFAVSGDSLFFTKDRFLRYFEYSSQKENQVIPIRRPGSTSLNQSPRTVSYSPTENAVLLCSDIDGGSYELYIIQKDSISRGDTVQ EAKKGAGGSAVFIARNRFAVLDKSSNQVLVKNLKNEVVKKSGLPIVTDAIFYAGTGNVLCRAEDRVVIFDLQQRLVLGDLPTPFVKYVVWSNDMETVALL SKHAIIIGNKKLVHQCTLHETIRVKSGAWDDNGIFIYSTLNHMKYCLPNGDSGIIRTLDVPIYITKVSGNTIYCLDREGKNRSIVIDPTEYMFKLSLLKK RYDHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTQNFERLSFL YLITGNLDKLSKMLKIAEVKGDVMGQFHNALYLGDIQERVKMLETAGQIPLAYITAKVHGLVDVVDRLAADLGDDIPSLPEGKVPSLLMPPTPIMCSGDW PLTQGFRQKFSFGGSNSRHASGNFDTAMRLLHRQLGIKNFTPLKSMFLDLHTGSQSYLRAMSATSVIALAVERWNESASPNVRGAPSLVFSFGQLEEKLK AGYKATTVGKITEALNNFVSILHTIPLIVVESRREVDEVKELVIIVKEYVVGLQMELKRREIKDEPVRQQELAAYFTHCNLQTPHLRLALLNAMSVCYKG KNYATAGNFARRLLETNPQNQEHAKKARQVLQASEKNMTDATELKYDYRNPFVVCGATYVPIYRGQKDVSCPYCSARFVPEQQGGICRVCDLAVVGADAS GLICSSTQIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62020			Coatomer, alpha subunit (.1)		Lus10035883 [exp]	0	1
AT1G62020			Coatomer, alpha subunit (.1)		Lus10011454 [exp]	1.4	0.9749
AT1G62020			Coatomer, alpha subunit (.1)		Lus10040752 [exp]	2.0	0.9554
AT5G16300			Vps51/Vps67 family (components...		Lus10037382 [exp]	2.6	0.9350
AT2G01970			Endomembrane protein 70 protei...		Lus10031876 [exp]	3.0	0.9551
AT1G13860		QUL1	QUASIMODO2 LIKE 1 (.1.2.3.4)		Lus10036883 [exp]	4.0	0.9477
AT5G16730			Plant protein of unknown funct...		Lus10009550 [exp]	4.9	0.9238
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10036789 [exp]	5.5	0.9474
AT4G21700			Protein of unknown function (D...		Lus10005493 [exp]	6.0	0.9290
AT2G01970			Endomembrane protein 70 protei...		Lus10031308 [exp]	6.5	0.9359
AT1G64650			Major facilitator superfamily ...		Lus10000337 [exp]	8.0	0.9295

Compare expression of checked genes

Lus10035883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.