Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79910 222 / 1e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G52315 159 / 3e-44 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G32350 155 / 2e-40 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G35730 130 / 1e-32 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G25420 117 / 3e-29 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT1G34220 120 / 5e-29 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G14830 116 / 4e-28 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G19710 100 / 7e-22 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G29440 99 / 1e-21 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G13340 86 / 6e-18 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025779 [exp] 707 / 0 AT1G79910 199 / 8e-59 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10025932 [exp] 464 / 5e-156 AT5G48840 440 / 2e-149 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Lus10011455 [exp] 292 / 5e-95 AT1G79910 233 / 1e-73 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10037536 [exp] 249 / 5e-78 AT1G79910 191 / 2e-57 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10038167 [exp] 241 / 2e-72 AT5G48840 447 / 7e-155 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Lus10034905 [exp] 186 / 1e-51 AT4G32350 256 / 3e-75 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10023635 [exp] 185 / 2e-51 AT4G32350 252 / 9e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028724 [exp] 126 / 3e-31 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10006061 [exp] 124 / 2e-30 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G181300 [exp] 325 / 3e-105 AT1G79910 244 / 1e-75 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054500 [exp] 323 / 6e-105 AT1G79910 216 / 4e-65 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054700 [exp] 253 / 2e-78 AT1G79910 141 / 1e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054601 [exp] 244 / 4e-75 AT1G79910 140 / 3e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.018G079500 [exp] 182 / 1e-50 AT4G32350 240 / 1e-69 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G117100 [exp] 128 / 1e-31 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.007G059800 [exp] 127 / 2e-31 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.008G121300 [exp] 120 / 2e-30 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.019G087400 [exp] 121 / 3e-29 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.006G149800 [exp] 118 / 7e-28 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10035885 pacid=23141198 polypeptide=Lus10035885 locus=Lus10035885.g ID=Lus10035885.BGIv1.0 annot-version=v1.0 ATGTTTGATAGCTTGACCAAGTCCAAATTCTACACAAAATGCAAGTCATTGATAAAGATGACCAAGGCGAGGCTGGAAGCGTCCAAGAAGAAGAAGAATG TTGTGGCCAATTACCTTAAGAATGATATCGCTGACCTTCTCAGGGCTGGCTTTGATTCCAATGCTTATAGCAGGACTCAAGAGCTCATATTCGATCATAA CTTGATTGCTGCTTACAAGTTTCTGGAAGATTTTTGTGACTGCATTTCCACAAATCTTGCTCTCTTGGACAAACGAAAGGAATGCCCCAAGGAATGCAGA GAAGCCATACATTCTCTGATGTATGCTGCAGCGAGATTGGCTGAATTTCCAGAACTTCGCGATCTTCGATCCCTTTTCGCTCATAGATATGGTGATTGCG TTGAATTGTATATTAACAAGGAGTTTGGTGAGTTGCTGAATCGAAGGCTTGCAACCAAGGAGATGAAGCTTCAGCTACTTGGTGATGTGGCTCAAGAATT CTCCATCAACTGGGATCCCAAATCCTTGGAGCAAAAACCCTTTAAACCTCCCCATTCCATCCAGCAGCAGAACCAGAACAGAAATGAGGGATCTAACAAT CCTGAAGATGGTGACCATAAAAGAATGAAGAGCAAAGATGATGTTGTTGCTCTAAGTAGTAAACACAACAGATTCAATAAGTATGGTAAAAGGGAAAGCC ACAGTACATCATCAACTGAGAACTTGTTGGGGAGAAGTACTGAAGCAGAAGTTGCTGCATCACCAAGAAGGAAGAATAATGTAAGTGATGAAAACCACAG GCTTCAAAGCAGCAGCGGGAGTGCTGAGAGCACCGATCGAGATAGTTCGCAACCTAGTCCGAGCTCAATGGGAACTACTAGTACTAGTACTGCTTCAAAG GATGAAGTGGACAGCATCAAGATCCCCTATAGGTTTCTACCTCCGCCCTATGTCAGAACAAGGCTGGACAAGCAGGATGTGAAGGACCAAAGTTCTTCGA ATTCGAGCTCTCCTGATACTGCTGAATCTTCCAGTGAATCACAACCAAAGCCAGGATCGGTAAGAAGAAGGCAACAAATGAAGGTAGTGGTGGGTGATGA GATTAGTCCATTGAAGCCAGCTCCAGGCCGTGCATATTTTGGCAGTTTTGATGCAGAGATATGGAAAGCATCTGATGATGATGAAGAAGGGGAAGATGAA GAGCTGAAAGGCAAGAAGAGCGCACAATATGAAAGGCCCATCGTGAGAAGTTATAAGCTGAAACCTCTGTCATGGAAATCAAGAGATCATGATGAGAGTG GTAAGGAAGAATTGGTCACTGGATCAGCACTACCTTTTGGTTCCCTAGGCAAGACTAGTGCAGCCATCATAACAAGGCATGGTAGGTCTCTATCAGCAGA GTCGAAAGTGTCGTCTGGACATGTGCATCCTAACCTACCGGATTATGATTCATTGGCTGCTAGGGTTGCAGCTTTCCTGGGTAAATGA
AA sequence Show only first row Show all	>Lus10035885 pacid=23141198 polypeptide=Lus10035885 locus=Lus10035885.g ID=Lus10035885.BGIv1.0 annot-version=v1.0 MFDSLTKSKFYTKCKSLIKMTKARLEASKKKKNVVANYLKNDIADLLRAGFDSNAYSRTQELIFDHNLIAAYKFLEDFCDCISTNLALLDKRKECPKECR EAIHSLMYAAARLAEFPELRDLRSLFAHRYGDCVELYINKEFGELLNRRLATKEMKLQLLGDVAQEFSINWDPKSLEQKPFKPPHSIQQQNQNRNEGSNN PEDGDHKRMKSKDDVVALSSKHNRFNKYGKRESHSTSSTENLLGRSTEAEVAASPRRKNNVSDENHRLQSSSGSAESTDRDSSQPSPSSMGTTSTSTASK DEVDSIKIPYRFLPPPYVRTRLDKQDVKDQSSSNSSSPDTAESSSESQPKPGSVRRRQQMKVVVGDEISPLKPAPGRAYFGSFDAEIWKASDDDEEGEDE ELKGKKSAQYERPIVRSYKLKPLSWKSRDHDESGKEELVTGSALPFGSLGKTSAAIITRHGRSLSAESKVSSGHVHPNLPDYDSLAARVAAFLGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79910			Regulator of Vps4 activity in ...		Lus10035885 [exp]	0	1
AT3G57120			Protein kinase superfamily pro...		Lus10011518 [exp]	1.0	0.9192
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10003513 [exp]	4.0	0.8839
AT5G55560			Protein kinase superfamily pro...		Lus10016594 [exp]	4.0	0.8913
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10002953 [exp]	8.4	0.8639
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10020247 [exp]	12.0	0.8573
					Lus10025225 [exp]	14.3	0.8825
AT5G39020			Malectin/receptor-like protein...		Lus10025545 [exp]	14.4	0.8874
AT1G69260		AFP1	ABI five binding protein (.1)		Lus10036898 [exp]	18.5	0.8480
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10042750 [exp]	18.7	0.8640
AT5G53110			RING/U-box superfamily protein...		Lus10007845 [exp]	20.0	0.8709

Compare expression of checked genes

Lus10035885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.