Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79915 275 / 3e-91 Putative methyltransferase family protein (.1) AT5G27400 56 / 1e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G27410 57 / 2e-08 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT5G49560 43 / 0.0001 Putative methyltransferase family protein (.1) AT1G63855 40 / 0.0002 Putative methyltransferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025778 [exp] 606 / 0 AT1G79915 272 / 2e-89 Putative methyltransferase family protein (.1) Lus10043153 [exp] 264 / 2e-79 AT5G43900 1250 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10031516 [exp] 52 / 4e-07 AT5G27400 364 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10015166 [exp] 50 / 1e-06 AT5G27400 377 / 9e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041869 [exp] 43 / 0.0002 AT1G63855 255 / 8e-87 Putative methyltransferase family protein (.1.2.3) Lus10031894 [exp] 42 / 0.0003 AT1G73320 362 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G181200 [exp] 402 / 1e-140 AT1G79915 308 / 4e-104 Putative methyltransferase family protein (.1) Potri.005G039000 [exp] 52 / 3e-07 AT5G27400 361 / 6e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G109000 [exp] 44 / 6e-05 AT1G63855 261 / 5e-89 Putative methyltransferase family protein (.1.2.3) Potri.017G153900 [exp] 44 / 8e-05 AT1G73320 347 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.009G068400 [exp] 43 / 0.0001 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10035886 pacid=23140983 polypeptide=Lus10035886 locus=Lus10035886.g ID=Lus10035886.BGIv1.0 annot-version=v1.0 ATGGATGATTACGGCGGCTGTCAGGAATTTGGGGAGGAAGTGGAGGAGCAGGTGACAAGCGAGCTACATCGTGGGTGTTTATCTGATTCCTCATCAGGGC CACACATAATGCATTTCACAATCTCCATCCCTCCCGGTGTGAACAGCGGCAGATTTAGCGGAATGTTAAAGGAAAATCAGCAAGCTCACAAGGAGAAAGT GATTGGCGTGGATGATGATGGTGACCTTGTTCTAACTAGACGTAGCCACTGCCAGGATTGTTCTGGTCAAATTATTAAACTCTCTATCCAGCATTATATC ACATCATCAATACGGGGAGTTGGTTTACAGGTTTGGAAGGCTGAGCTATTGTTGTCCGACTTTGTGCTGCATAAAATGCTTACTTCCTCAGATTTCAATG ACATCAGTTCGTTAGTACTTGGAGCTGGAACAGGATTAGTTGGTATGTTGGTTGGACATGTGGCTAAATCAGTGTTCCTGACAGATCGTGGTGAGAAAAT CCTAGCTAATTGTGGAAGCAATGTTCATCTTAATTATGAAGTCCTGCAGTATAATGGGTCAATTTATGTACGTGAACTCGATTGGGAAAATTCCTGGCCC CCAAATGTGAAACTACAGAATGATTCTTGTCCTGAAAGCTTTTGGTGGACTCCTTCCGACGTTGAAGAAGCTGAGAGAGCTTCTGTGCTCCTAGCTGCGG ATGTAATATACAGTGATGACCTGACTGATGCTCTATTCAGTTTGCTCGATACACTAATGCAATTGGGTCCGGAGAAGGTTTTATACTTGGCCTTGGAGAA GCGCTACAATTTCAGCCTCGTGGATTTTGATGTGGTGGCGAATGGTTATGCTCATTTTCGGAGTTATATAAGGGGCGAAGAAGAATTTGGGGAACGTGAG TCCCATACTCCATTTGTGGGAAGATGCATCGACCTTTGGCAGATTCCACAGTTGGTAAAGGATTATGATAGGGGAGAGGACTTAGAGCTCTGGAAGATCA AGTATGATAGGAGGAAAGCCCGCTCGTAG
AA sequence Show only first row Show all	>Lus10035886 pacid=23140983 polypeptide=Lus10035886 locus=Lus10035886.g ID=Lus10035886.BGIv1.0 annot-version=v1.0 MDDYGGCQEFGEEVEEQVTSELHRGCLSDSSSGPHIMHFTISIPPGVNSGRFSGMLKENQQAHKEKVIGVDDDGDLVLTRRSHCQDCSGQIIKLSIQHYI TSSIRGVGLQVWKAELLLSDFVLHKMLTSSDFNDISSLVLGAGTGLVGMLVGHVAKSVFLTDRGEKILANCGSNVHLNYEVLQYNGSIYVRELDWENSWP PNVKLQNDSCPESFWWTPSDVEEAERASVLLAADVIYSDDLTDALFSLLDTLMQLGPEKVLYLALEKRYNFSLVDFDVVANGYAHFRSYIRGEEEFGERE SHTPFVGRCIDLWQIPQLVKDYDRGEDLELWKIKYDRRKARS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79915			Putative methyltransferase fam...		Lus10035886 [exp]	0	1
AT5G61970			signal recognition particle-re...		Lus10032538 [exp]	1.4	0.9238
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10000874 [exp]	4.0	0.9039
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10015166 [exp]	4.6	0.9165
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Lus10023721 [exp]	5.6	0.8786
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10009789 [exp]	5.7	0.8779
AT4G12790			P-loop containing nucleoside t...		Lus10036411 [exp]	5.7	0.9169
AT1G73430			sec34-like family protein (.1....		Lus10001793 [exp]	6.9	0.8833
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10017021 [exp]	7.7	0.9036
					Lus10031226 [exp]	10.1	0.8512
AT4G38170		FRS9	FAR1-related sequence 9 (.1)		Lus10013855 [exp]	10.2	0.8812

Compare expression of checked genes

Lus10035886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.