Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52320 595 / 0 unknown protein AT5G25590 538 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT1G02110 173 / 3e-45 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 173 / 5e-45 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT3G60320 149 / 4e-37 Protein of unknown function (DUF630 and DUF632) (.1) AT2G34670 127 / 3e-30 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G27090 117 / 6e-27 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 112 / 3e-25 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT1G77500 110 / 1e-24 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 106 / 1e-23 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025777 [exp] 885 / 0 AT1G52320 652 / 0.0 unknown protein Lus10022116 [exp] 553 / 0 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10037901 [exp] 533 / 0 AT5G25590 627 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10038627 [exp] 444 / 2e-149 AT5G25590 538 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10002864 [exp] 294 / 5e-94 AT5G25590 339 / 1e-111 Protein of unknown function (DUF630 and DUF632) (.1) Lus10000014 [exp] 176 / 3e-51 AT5G25590 209 / 3e-64 Protein of unknown function (DUF630 and DUF632) (.1) Lus10028431 [exp] 176 / 1e-46 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10041884 [exp] 171 / 5e-46 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10024007 [exp] 157 / 1e-39 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G054800 [exp] 701 / 0 AT1G52320 626 / 0.0 unknown protein Potri.001G181100 [exp] 688 / 0 AT1G52320 615 / 0.0 unknown protein Potri.018G036400 [exp] 598 / 0 AT5G25590 656 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G244100 [exp] 587 / 0 AT5G25590 603 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G112300 [exp] 182 / 8e-49 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.004G177200 [exp] 183 / 1e-48 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 181 / 5e-48 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.007G056700 [exp] 174 / 8e-46 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.014G047400 [exp] 157 / 1e-39 AT3G60320 862 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G108400 [exp] 156 / 2e-39 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632) PF04783 [flax] [poplar] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Lus10035887 pacid=23141132 polypeptide=Lus10035887 locus=Lus10035887.g ID=Lus10035887.BGIv1.0 annot-version=v1.0 ATGGGGTGCTCACAGTCCAAAATCGAGAACGAAGAAGCCGTCACCCGCTGCAAGGAACGCAAGCAGTTCATGAAAGATGCCGTCTCCGCACGCAACGCTT TCGCCGCCGCTCACTCCGCCTACGCTATGTCCCTTAAGAACACCGGCGCCGCTCTCAGCGATTACGCCCACGGCGAAGTCCCTACCTCCTCAACCTCCGC CGCCACCCTCCCTACCTCCTCCTCCGCTCCTTTCACCGTGCCAGCGCCGGTGCCTCCGCAGGCTCCCTTCGATACGCTTCTTCCCCCTCCCCCTCTGCCT ACGGAGTATCAAGGAGCTACTCTCGATTTTCAAGGAGCTCCCTTGCAGAGGGCCACTAGTATGCCGGAGATGAAGATCCATAAACCGGATTTGAAGCCGG CCGGTCCGACTATTAATGAAGACGAGGAGATGGAATTCGAGCCCCCTGAGGACGAGAAATTGGTCAGGAAGCGGGGTGGAAGTAGTAGGGGAAGTAGTAG TAGTAACAGAGAGAATCATTACATGGAGAAGGAGCCACCGCCGCTGCCGCCGCAGCCACAGATGAAGAGGCAAGAAAAAAAAAAAAGGCAAGAAGTGGTG ATGCGGCCGCCTCCTGTTGTTCAGCAGGAAACCACATGGGATTACTTCTTCCCCCCGGTTGAAAACATGCCTGGGCCTACTCTGGCGGAACCGGTGTTGG AGGATGATGATGATGACGACGAAGACAATGAGGTTGAGATGCGGATGAAGGAAGAAAAGGCTGAGCGAATGGCTTACGAAGCAAAGGCGGCTAAGAGATT GGCGGAAGAGGAACGGATGGTAATGCAGGAGCAAAATAAGGTAGAGAAGGCAGTGGAGGTGCCTGTACCTGTACCCGTTCCTATTGTTGAGAAGAAGCCA GGTAAGAAAGTCGGGGGAGACGACGTGGGAAGGAGGATGATGAAAGGATTGAGTTTGATGCAGATATTTACTGAGCTTGATAATCACTTCTTGGCTGCAT CTGAGAGTGCGCATGAGGTTTCCAAGATGCTGGAGGCCACAAAATTGCATTATCATTCTAATTTTGCTGATAATCGTGGGCATATTGATCACTCTGCAAG AGTGATGCGAGTCATTACATGGAATAGGTCCTTTAAAGGGGTCCCTAGTGCATACGATGGGATCGACGAATTTGATTCTGAGGAGCAAGAAACTCACGCC ACTGTACTGGACAAGATGCTAGCTTGGGAAAAGAAGCTTTATGATGAAGTGAAGGCAGGTGAAGTTATGAAGTTTGAGTATCAAAGGAAGGTTGGTTTGC TTAATAAGCAGAAGAAACGTGGTTCCAATCTGGAGTCCCTGGAGAAATTGAAGGCTGCAGTAAGTCATCTGCATACGAGATACATTGTAGATATGCAATC AATGGATTCCACTGTTTCGGAGATAAATCGCTTACGTGATGAGCAGTTTTATCCAAAACTCGTCAACCTAGTTGATGGGATGGCGATAATGTGGGATACA ATGCGAGTTCATCATGAGGCACAATCGAAGATCGTTTATGCGTTGAGATCTTTGGACATTTCTCAGTCCCCCAAGGAAACTAGCGAGCACCACCATGACC GTACCTATCAATTATGGGCAGTTGTTCGGGAGTGGCATGCACAGTTCTGTGGTCTAATAGACAACCAAAAAGCATACCTAAAGTCCCTTAACAATTGGTT GAAACTGAACCTTATCCCGATCGAGAGCAGTTTGAAAGAAAAGGTGTCGTCTCCACTCAGAGTTCAGACTTCTCCAATTCAGCCCCTTCTAATGGCCTGG CATGACTTTATGGACAAGCTACCGGACGAGGTTGCAAGAACAGCAATAAGTAACTTTGCAGCCGTGATAGAGACAATCATGCATCATCAAGACGAGGAGA TGAAGCTGAAAGAAAATTGTGAAGAAACCCGTAAAGATCTTGCTCGCAAGACGAGGCAGTTTGAGGACTGGTATAACAAGTATATGCAGCGAAGAACTCC AGAAGAGCTGGATCCAGAGAGGCCAGACAGCAGCATCAAGGATGCTATCGCGGACAGACAGTTTGCAGTGGAGGCTGTGAAGAAGCAACTCGAAGAAGAG GAAGAAGCGTACCAGAGGATTTGCGTTCAAGTGAGGGAGAAGTCGTTAGCGAGTCTCAAGACTCGTTTGCCGGAGCTGTTCAGGGCAATGTGCGATGTTG CTTTGGCTTGTTCAGAGATGTACAGGACCCTGAGGGTTATATCACAACGCCAAAGAAAACCAAGCCAAACCTCCTGA
AA sequence Show only first row Show all	>Lus10035887 pacid=23141132 polypeptide=Lus10035887 locus=Lus10035887.g ID=Lus10035887.BGIv1.0 annot-version=v1.0 MGCSQSKIENEEAVTRCKERKQFMKDAVSARNAFAAAHSAYAMSLKNTGAALSDYAHGEVPTSSTSAATLPTSSSAPFTVPAPVPPQAPFDTLLPPPPLP TEYQGATLDFQGAPLQRATSMPEMKIHKPDLKPAGPTINEDEEMEFEPPEDEKLVRKRGGSSRGSSSSNRENHYMEKEPPPLPPQPQMKRQEKKKRQEVV MRPPPVVQQETTWDYFFPPVENMPGPTLAEPVLEDDDDDDEDNEVEMRMKEEKAERMAYEAKAAKRLAEEERMVMQEQNKVEKAVEVPVPVPVPIVEKKP GKKVGGDDVGRRMMKGLSLMQIFTELDNHFLAASESAHEVSKMLEATKLHYHSNFADNRGHIDHSARVMRVITWNRSFKGVPSAYDGIDEFDSEEQETHA TVLDKMLAWEKKLYDEVKAGEVMKFEYQRKVGLLNKQKKRGSNLESLEKLKAAVSHLHTRYIVDMQSMDSTVSEINRLRDEQFYPKLVNLVDGMAIMWDT MRVHHEAQSKIVYALRSLDISQSPKETSEHHHDRTYQLWAVVREWHAQFCGLIDNQKAYLKSLNNWLKLNLIPIESSLKEKVSSPLRVQTSPIQPLLMAW HDFMDKLPDEVARTAISNFAAVIETIMHHQDEEMKLKENCEETRKDLARKTRQFEDWYNKYMQRRTPEELDPERPDSSIKDAIADRQFAVEAVKKQLEEE EEAYQRICVQVREKSLASLKTRLPELFRAMCDVALACSEMYRTLRVISQRQRKPSQTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52320			unknown protein		Lus10035887 [exp]	0	1
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10027027 [exp]	1.4	0.8870
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10030496 [exp]	2.4	0.8784
AT5G16110			unknown protein		Lus10009170 [exp]	2.8	0.8835
AT5G01760			ENTH/VHS/GAT family protein (....		Lus10014155 [exp]	4.0	0.8566
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007656 [exp]	5.7	0.8708
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10011442 [exp]	6.9	0.8659
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10032097 [exp]	8.1	0.8676
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10000225 [exp]	8.4	0.8506
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10009120 [exp]	8.9	0.8430
AT1G32420			F-box and associated interacti...		Lus10011190 [exp]	9.5	0.8200

Compare expression of checked genes

Lus10035887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.