Plant FIBer expression Database

Lus10035889 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025776
[exp]
164 / 3e-51 AT1G52343 112 / 1e-29 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G035800
[exp]
40 / 0.0003 AT4G32680 76 / 1e-15 unknown protein
PFAM info
Representative CDS sequence
>Lus10035889 pacid=23141039 polypeptide=Lus10035889 locus=Lus10035889.g ID=Lus10035889.BGIv1.0 annot-version=v1.0
ATGGCAAGTGTTGAAAAATCTAACGAGAGGAGGCGGCGTATCATGGAAAGAGGATCCGATCGGTTGGCTCTCATCACCGGCCAACTCACGAATCTCGAAC
GCACTTCCTCCCTCCCCTCCGCCGCTCCCCCTTCCCTTTCCTTTACCGAATTCCAAATTTTAACGACCCTGTTTGTTTATATTGAGGTTGCAGATCGATC
AGAGATCCATTTCGATACCCTGCCGGCCACCGAAGTAACACCTAGAAAGGAATATACAGTCCTGCAACAAGTTCCAAAGGCCGAAAAATCCGATTCGTCT
AATCACACTAGATTCGCAACAACATCGGACGTGACAAAGCCTCAAGCTCCACCGAAAACCGGCCAACCACCAACTCACAAACCACCACCACCATCATCAT
CGTCGTCGAAGGCGAAACAGCAAACAACAACATTCTTCTCATCGAGGCGCCTGAATGCTTGCATCATAGCTTCAGTGATGCCACGAGCCAATGCTCCACC
GTTATAG
AA sequence
>Lus10035889 pacid=23141039 polypeptide=Lus10035889 locus=Lus10035889.g ID=Lus10035889.BGIv1.0 annot-version=v1.0
MASVEKSNERRRRIMERGSDRLALITGQLTNLERTSSLPSAAPPSLSFTEFQILTTLFVYIEVADRSEIHFDTLPATEVTPRKEYTVLQQVPKAEKSDSS
NHTRFATTSDVTKPQAPPKTGQPPTHKPPPPSSSSSKAKQQTTTFFSSRRLNACIIASVMPRANAPPL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G32680 unknown protein Lus10035889
[exp]
0 1
AT4G17250 unknown protein Lus10008508
[exp]
2.2 0.8673
AT4G31500 SUR2, RNT1, RED... SUPERROOT 2, RUNT 1, RED ELONG... Lus10012399
[exp]
5.5 0.7882
AT1G47960 ATC/VIF1, C/VIF... cell wall / vacuolar inhibitor... Lus10016317
[exp]
7.5 0.7896
AT1G62280 SLAH1 SLAC1 homologue 1 (.1) Lus10031545
[exp]
8.8 0.7603
AT5G43280 ATDCI1 "delta\(3,5\),delta\(2,4\)-die... Lus10002583
[exp]
9.4 0.8161
AT1G52870 Peroxisomal membrane 22 kDa (M... Lus10043097
[exp]
18.4 0.7625
AT1G47960 ATC/VIF1, C/VIF... cell wall / vacuolar inhibitor... Lus10002738
[exp]
22.2 0.7528
AT2G23770 protein kinase family protein ... Lus10022488
[exp]
25.9 0.7419
AT2G47600 ATMHX1, ATMHX MAGNESIUM/PROTON EXCHANGER 1, ... Lus10030365
[exp]
26.1 0.7107
AT2G02230 ATPP2-B1 phloem protein 2-B1 (.1) Lus10042713
[exp]
26.8 0.7453

Lus10035889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.