Plant FIBer expression Database

Lus10035890 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G14920 253 / 2e-77 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
AT5G05480 190 / 6e-54 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025775
[exp]
436 / 1e-148 AT3G14920 568 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Lus10017926
[exp]
275 / 1e-85 AT3G14920 649 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Lus10025771
[exp]
195 / 2e-55 AT3G14920 396 / 1e-130 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Lus10017437
[exp]
150 / 5e-39 AT5G05480 605 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Lus10007518
[exp]
59 / 2e-09 AT5G05480 315 / 1e-104 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G109700
[exp]
280 / 3e-87 AT3G14920 708 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Potri.008G072400
[exp]
156 / 9e-42 AT5G05480 577 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Potri.010G185100
[exp]
150 / 1e-39 AT5G05480 601 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12222 PNGaseA Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A
Representative CDS sequence
>Lus10035890 pacid=23141089 polypeptide=Lus10035890 locus=Lus10035890.g ID=Lus10035890.BGIv1.0 annot-version=v1.0
ATGGCTCCTCATCATTTCTCTACATTCCCTCTACTTGTTCTCGTCTTCCTCAATTTCCTCCTCTCCACCTCTGCAAACCTCCACAGATTCAAACCCGATT
CCCTCACAATCCCGACAACTACCGAATCCAATACCGTGTTCTTCGAAGTCACGAAACCCATCTCAGTCCCCAACACGAGACCATGCGTCCACCATCTCCT
CACCCATGATTTCGGATACACTCTCAACAAGCCCCCTGTTCTTACCAAATACACTCCTCCTTCCCACTTCCCTTCTTCCTCTTTCTCCAAAATCGTACTC
GAATGGAACGCCACTTGCAAAGGCAGGCAGTTTGACCGCATCTTCGGCATCTGGCTCGGCGGGGTCGAGCTTCTTCGCAGCTGTACCGCCGAGCCCACAC
GAACCGGGATCTTCTGGAGCGTCCGAAAAGATATTACCAAGTACTCTTCGTTGCTGCAAAGGAATCGAACTCAGGACCTCTCCGTTTTTCTTGGGAACAT
CGTTGATGGTACCTACACGGGGATCTATCGTATCAATGTCAGTATCTATTTTTACCCTTCTGCCCCCGAGGCTGAACACAAATTTCGGAAGAGGACCGAT
AACGCGACTGCTGATTTGATACTGCCGATTTCGAGGACCAATGTTCAGTCGTTGAACGATGGATTGTGGTTCGAGATCGAAAACTCGACCCAATTGGTGT
TGAAAGAGTTGGTCGGCAATATTCCACCTAATGTTTATAGGGCTGTGCTGGAGGTTTACGTTTCCCCCCATGGGGATGATGAATTTTGTGACACCTTTTT
AGGGACATTGCTCGACGACTCTAAGACGCACAGTTTCGGGTTCAGAGTGGCCAACGCGTTAGATGTGTGGTTCATCGATGCCAATCTACATCTTTGGTTG
GACAGCAAGAGCGAGAAAACAGAGGCGAAGCTGGTTAAGCACGATAGCGATCTTCGTCTAGACGTGCATTCGAATTTCGAAGGGTTGGATGGTAAATTTA
CTACGGATGCTAGTAGGTCGGTCTACTCGCACGGGTGGGTGAAATCGTCGCACGGTAACATCACTACTCGGTTCGAGCAACGATCAAGGTACAACAGTTC
AATGGAGCTTCGAAAAGACGGAAATGTACAGATTGTGAATCAGACGATCTCGACATACGACGCCGCGTCATTCAAGCCCAAGTTTGAAATTGAAGAAGAA
ATTCAGTATAAAATTGTACACGGATACCCAAGAGAAAGAGAACAACGCGGTTTCCTATGCGACGGATCTTTGGGGTTTGGTTCTAAGGAATACGGCGGTG
GGGGCGGCGGCGGCAGGGCACGTAACAGATCGGCGGTGGAAAATGTGCAGAAGGAAAGGAGAAATTGTGGTGAAGGGGAACTTGGTGACTAG
AA sequence
>Lus10035890 pacid=23141089 polypeptide=Lus10035890 locus=Lus10035890.g ID=Lus10035890.BGIv1.0 annot-version=v1.0
MAPHHFSTFPLLVLVFLNFLLSTSANLHRFKPDSLTIPTTTESNTVFFEVTKPISVPNTRPCVHHLLTHDFGYTLNKPPVLTKYTPPSHFPSSSFSKIVL
EWNATCKGRQFDRIFGIWLGGVELLRSCTAEPTRTGIFWSVRKDITKYSSLLQRNRTQDLSVFLGNIVDGTYTGIYRINVSIYFYPSAPEAEHKFRKRTD
NATADLILPISRTNVQSLNDGLWFEIENSTQLVLKELVGNIPPNVYRAVLEVYVSPHGDDEFCDTFLGTLLDDSKTHSFGFRVANALDVWFIDANLHLWL
DSKSEKTEAKLVKHDSDLRLDVHSNFEGLDGKFTTDASRSVYSHGWVKSSHGNITTRFEQRSRYNSSMELRKDGNVQIVNQTISTYDAASFKPKFEIEEE
IQYKIVHGYPREREQRGFLCDGSLGFGSKEYGGGGGGGRARNRSAVENVQKERRNCGEGELGD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G14920 Peptide-N4-(N-acetyl-beta-gluc... Lus10035890
[exp]
0 1
AT1G13610 alpha/beta-Hydrolases superfam... Lus10019205
[exp]
2.0 0.9112
AT5G20630 ATGER3, GLP3A, ... GERMIN-LIKE PROTEIN 3, ARABIDO... Lus10037664
[exp]
9.4 0.9003
Lus10005604
[exp]
12.2 0.8274
AT1G03010 Phototropic-responsive NPH3 fa... Lus10029443
[exp]
21.1 0.8502
AT4G15920 SWEET17, AtSWEE... Nodulin MtN3 family protein (.... Lus10015196
[exp]
22.3 0.8294
AT1G71320 F-box family protein (.1) Lus10038210
[exp]
24.7 0.8574
AT5G48670 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) Lus10021399
[exp]
34.4 0.7499
AT1G18640 PSP 3-phosphoserine phosphatase (.... Lus10021156
[exp]
40.5 0.7078
AT4G11950 Protein of unknown function (D... Lus10002998
[exp]
41.4 0.8277
AT2G46770 NAC NST1, ANAC043, ... NAC SECONDARY WALL THICKENING... Lus10030205
[exp]
43.9 0.8079

Lus10035890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.