Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79960 129 / 1e-34 OFP ATOFP14, OFP14 ovate family protein 14 (.1) AT4G14860 63 / 2e-11 OFP ATOFP11 ovate family protein 11 (.1) AT5G04820 59 / 9e-10 OFP ATOFP13, OFP13 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) AT1G05420 58 / 1e-09 OFP ATOFP12, OFP12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) AT3G52540 58 / 2e-09 OFP ATOFP18, OFP18 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 18, ovate family protein 18 (.1) AT2G32100 54 / 3e-08 OFP ATOFP16, OFP16 RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, ovate family protein 16 (.1) AT2G36050 54 / 5e-08 OFP ATOFP15, OFP15 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15, ovate family protein 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006912 [exp] 63 / 3e-11 AT1G05420 112 / 2e-30 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10014677 [exp] 62 / 5e-11 AT1G05420 109 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10034150 [exp] 62 / 1e-10 AT5G04820 134 / 8e-38 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10010554 [exp] 61 / 2e-10 AT1G05420 104 / 2e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10043433 [exp] 61 / 3e-10 AT5G04820 146 / 2e-42 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10006120 [exp] 59 / 1e-09 AT1G05420 103 / 6e-26 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 12, ovate family protein 12 (.1) Lus10016979 [exp] 54 / 5e-08 AT5G04820 105 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10021303 [exp] 54 / 7e-08 AT5G04820 103 / 8e-26 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Lus10014164 [exp] 42 / 0.0002 AT1G06920 104 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G180400 [exp] 164 / 7e-48 AT1G79960 137 / 2e-38 ovate family protein 14 (.1) Potri.005G211300 [exp] 80 / 7e-17 AT4G14860 92 / 5e-23 ovate family protein 11 (.1) Potri.002G051200 [exp] 76 / 2e-15 AT4G14860 62 / 1e-11 ovate family protein 11 (.1) Potri.008G153500 [exp] 70 / 1e-13 AT4G14860 103 / 1e-27 ovate family protein 11 (.1) Potri.010G087200 [exp] 68 / 1e-12 AT4G14860 101 / 3e-26 ovate family protein 11 (.1) Potri.008G017500 [exp] 60 / 3e-10 AT5G04820 163 / 5e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.016G072900 [exp] 60 / 5e-10 AT5G04820 153 / 2e-45 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.010G241500 [exp] 57 / 2e-09 AT5G04820 164 / 3e-50 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.006G205500 [exp] 57 / 5e-09 AT5G04820 159 / 1e-47 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1) Potri.009G161600 [exp] 52 / 1e-07 AT5G04820 110 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, ovate family protein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10035891 pacid=23141165 polypeptide=Lus10035891 locus=Lus10035891.g ID=Lus10035891.BGIv1.0 annot-version=v1.0 ATGCCCAGAAAGCTTCGGAAATCAGTGAGGGGCTATCTCTCCAAATTCAAAAGCGCCAATTCCAATCTTCATTTCTCATCCGCCTCCTTCTCTTCCACTT CCAAAAGCTGGATTTTGAAAGGATGTAAGCACGTCAAAACTCTCTCTTTCTCCGGCGCCGCCGCCGTTGACCACCACCGCCGCCGTCAAGTTCAAGATGA CGCCCAAAATAAGCAGCCAGCCGTCGCCGCCGCCGCCACGCTTGATGACGTCGATCAGTTCCTCTTCGATAATTTCCGGTCGCTATACATCCGAGACGAT GACGACGACGACCACCGCCACCACCAATCCAAACAACTCGGTAACCGCCGTCAGTTTGACCCTCCACCAAACCGGTCCATCATCCGCCCAGTCGTTGCTT CGTCGTCCGGCTCGTTTCCCGATGAATTACCCGCCCGGTTAAGCCTGACAACCACGGATTCGACCGGTGACGTGGCAGGTTCCAGCTCCACGACTTCCGA CACGAATCCAATATCTGCGACTGTGGAAGATGACGTGGCACTGCCAGAGGACTGCATTGCGCTGCTGACGTACTCGAGGGCCCCACAGGATGATTTCTTC CGGTCAATGAGGGAAATGGTGGAGTCAAGGATTCAAGCTGACCGGAGCGTTGACTGGGAGTTCATGGAAGAGCTGCTGTTCGGGTACTTGAACTTGAACG ACAAGAAGTCCCACAAGTTCATACTGAGTGCTTTTGTGGACCTCGTCGTCAGCCTCCGTCCTTCTCCGTCCGGGAGATCACGGCGGCAGAGGGGAAATCC GAGGAGTGATGACCTGGTGTTCAAACCTGCCGGTGCTAGGTTGGGTGTTCCTGATACCCCGAACGTTGCCGCTTGGTCTTCTTCGCTCATTCGCAATGCG TCTGCTCCTCGTTACCACATCATCATCCTCTCGCCCGGGTATCCGATGGACAGAGGACGACGAGACGATTCCAACGAGACCAGCCGGATCTCAAATGGAG GTTGGACGAGAGAGATACGGGCGTTCGAAGATGAAAATCCTGGTCTGGTTGAAGGACCGCACGGAGTGTGGTCTCTGGCAAAACCACACGATGTGTGGCG GATGCAGATCGCCATATTCAATGCATTTTTGTAG
AA sequence Show only first row Show all	>Lus10035891 pacid=23141165 polypeptide=Lus10035891 locus=Lus10035891.g ID=Lus10035891.BGIv1.0 annot-version=v1.0 MPRKLRKSVRGYLSKFKSANSNLHFSSASFSSTSKSWILKGCKHVKTLSFSGAAAVDHHRRRQVQDDAQNKQPAVAAAATLDDVDQFLFDNFRSLYIRDD DDDDHRHHQSKQLGNRRQFDPPPNRSIIRPVVASSSGSFPDELPARLSLTTTDSTGDVAGSSSTTSDTNPISATVEDDVALPEDCIALLTYSRAPQDDFF RSMREMVESRIQADRSVDWEFMEELLFGYLNLNDKKSHKFILSAFVDLVVSLRPSPSGRSRRQRGNPRSDDLVFKPAGARLGVPDTPNVAAWSSSLIRNA SAPRYHIIILSPGYPMDRGRRDDSNETSRISNGGWTREIRAFEDENPGLVEGPHGVWSLAKPHDVWRMQIAIFNAFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79960	OFP	ATOFP14, OFP14	ovate family protein 14 (.1)		Lus10035891 [exp]	0	1
AT3G18430			Calcium-binding EF-hand family...		Lus10029670 [exp]	6.0	0.8587
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10004322 [exp]	8.7	0.7994
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10040227 [exp]	11.0	0.7992
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10031339 [exp]	15.7	0.7191
					Lus10016041 [exp]	15.8	0.8388
AT2G37540			NAD(P)-binding Rossmann-fold s...		Lus10023762 [exp]	17.5	0.8498
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10003323 [exp]	19.2	0.8329
AT5G25840			Protein of unknown function (D...		Lus10037569 [exp]	23.5	0.8099
AT2G42750			DNAJ heat shock N-terminal dom...		Lus10020749 [exp]	26.5	0.7689
AT3G45400			exostosin family protein (.1)		Lus10020308 [exp]	27.2	0.7473

Compare expression of checked genes

Lus10035891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.