Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53050 790 / 0 Protein kinase superfamily protein (.1) AT1G09600 619 / 0 Protein kinase superfamily protein (.1) AT1G54610 598 / 0 Protein kinase superfamily protein (.1.2.3) AT5G50860 594 / 0 Protein kinase superfamily protein (.1) AT1G57700 585 / 0 Protein kinase superfamily protein (.1) AT1G03740 578 / 0 Protein kinase superfamily protein (.1.2) AT1G71530 560 / 0 Protein kinase superfamily protein (.1.2) AT1G33770 559 / 0 Protein kinase superfamily protein (.1) AT5G44290 546 / 0 Protein kinase superfamily protein (.1.2.3.4) AT1G74330 543 / 0 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025773 [exp] 1107 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10012805 [exp] 654 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 636 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033684 [exp] 622 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10004144 [exp] 610 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 609 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10031651 [exp] 602 / 0 AT1G53050 645 / 0.0 Protein kinase superfamily protein (.1) Lus10039836 [exp] 595 / 0 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1) Lus10028890 [exp] 587 / 0 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G119400 [exp] 969 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 965 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.013G130000 [exp] 664 / 0 AT1G53050 690 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 660 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 659 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 629 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G103300 [exp] 628 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.013G032200 [exp] 627 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.012G103900 [exp] 624 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.003G003700 [exp] 619 / 0 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10035892 pacid=23141267 polypeptide=Lus10035892 locus=Lus10035892.g ID=Lus10035892.BGIv1.0 annot-version=v1.0 ATGGGTTGCCTGTGCTGTAAACCCTTTGCCAAAGAAAGGCTCTCAAGTAAAGCCTCATCAGAGGTAAGGGTATCCAGGGCTGCGTCTTCAAGGAGGGAAG AAGTACATAGACCTAAAGAGAAATACGATAGCAACGATGGAAGAGAAATGTTAATTGATAAGCAAATGATTGGATCAAGTAGGCTGCATGTGAGTGAGAA TGTTGATAAGAGGAGACCAAAGATGGAATATGCTGTTGTGCGGCATCCAAGTATGGGTAGTATGCCAAAAGCAACTGAAGGGGAGCAGGTTGCTGCTGGA TGGCCTTCCTGGTTAGCTGCAGTGGCTGGCGAAGCAATAAAGGGATGGGTTCCTAGGAAGGCTGATTCTTTCGAGAAGCTTGATAAGATTGGCCAAGGAA CCTATAGTAATGTCTACAGGGCACGTGACCTAGATCAGAAAAAGATTGTTGCTTTAAAGAAAGTGAGGTTTGATAATCTTGAACCAGATAGTGTTCGGTT TATGGCAAGGGAGATCAATATTCTGCGTAGGCTTGACCATCCTAATGTGATAAAGCTAGAAGGATTAGTTACATCAAGGATGTCTTGTAGCTTGTACCTT GTTTTTGAATACATGGAACATGATTTGGCTGGCCTTGCATCACATCCTGGTTTTAAGTTTACAGAAGCACAGGTCAAATGTTACATGCAACAACTCCTAC TAGGACTTGATCATTGTCACAGTCGTGGTGTCTTACACAGGGATATTAAAGGTTCCAATCTTCTAATTGGTAATAATGGTATCCTTAAAATTGCAGACTT TGGTCTAGCAAGCATTTATGATCCCAGTCATATTCAGCCTTTCACAAGCCGGGTTGTGACTCTCTGGTATCGTCCTCCGGAGCTTCTACTTGGAGCCACT TACTATGGAACTGCTGTTGACTTGTGGAGTACTGGTTGTATACTTGCCGAATTATATGCTGGAAAGCCTATTATGCCTGGTAGAACGGAGGTGGAGCAGT TGCATAAGATTTTCAAACTTTGTGGTTCTCCGTCTGAGGAATATTGGAAAAAGTCAAAGCTGCCTCATGCAACTATATTTAAGCCTCAGCAACCATACAG ACGCTGTGTAGCTGACACATTTAAGGAGTTTCCTGCACCAGCTTTAGCACTCATGGAGACCTTGCTATCTGTTGATCCTGTGGACAGGGGAACTGCCGCT TCTGCTTTGAGAAGTGATTTCTTTACAACAAAGCCACTTCCGTGTGATCCTTCAAGCTTGCCAAAATATCCGCCAAGCAAGGAGTTTGATGCAAAAATGC GAGATGAAGAAGCTAGAAGACAAGGCGCAGTAGGAAGCAAGGGCCACAGACATGATACTGAAAGAAGAGGAATGAGAGAATCTCGAGCAGTACCAGCACC TGATGCTAATGCTGAGCTGGCCGTATCTATGCAGAAGAGGAAAGGTCAGTCGAATACTAAAAGCCGGAGTGAGATGTTTAATCCTCATCCAGAAGAAGTT GCATCTGGGTTTCCAATCGACCCTCCTAGACCTTCACAGGTTGTTGAAACAAGTGAACCCCGGGGTCATCATCAGCATAAGAGAGGCTCTCATTCAGGCC CCCTTACTCAACGTGCTGCTTGGGCAAAAAATAATGGTAGGAATCCTGAGGAAGCTCCCAAGATTTGTAACGGAGGGGAGCTGGCAACTATTTCCCGGCT AAGTAACTGTAGTAACTGGACATGCCAGTTCATAATTGGATATTACAATCTCATGTAA
AA sequence Show only first row Show all	>Lus10035892 pacid=23141267 polypeptide=Lus10035892 locus=Lus10035892.g ID=Lus10035892.BGIv1.0 annot-version=v1.0 MGCLCCKPFAKERLSSKASSEVRVSRAASSRREEVHRPKEKYDSNDGREMLIDKQMIGSSRLHVSENVDKRRPKMEYAVVRHPSMGSMPKATEGEQVAAG WPSWLAAVAGEAIKGWVPRKADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPDSVRFMAREINILRRLDHPNVIKLEGLVTSRMSCSLYL VFEYMEHDLAGLASHPGFKFTEAQVKCYMQQLLLGLDHCHSRGVLHRDIKGSNLLIGNNGILKIADFGLASIYDPSHIQPFTSRVVTLWYRPPELLLGAT YYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYRRCVADTFKEFPAPALALMETLLSVDPVDRGTAA SALRSDFFTTKPLPCDPSSLPKYPPSKEFDAKMRDEEARRQGAVGSKGHRHDTERRGMRESRAVPAPDANAELAVSMQKRKGQSNTKSRSEMFNPHPEEV ASGFPIDPPRPSQVVETSEPRGHHQHKRGSHSGPLTQRAAWAKNNGRNPEEAPKICNGGELATISRLSNCSNWTCQFIIGYYNLM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53050			Protein kinase superfamily pro...		Lus10035892 [exp]	0	1
AT4G10070			KH domain-containing protein (...		Lus10003519 [exp]	5.3	0.8900
AT2G20580		RPN1A, AtRPN1a	26S proteasome regulatory subu...		Lus10002169 [exp]	8.1	0.9036
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10009241 [exp]	9.0	0.8946
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Lus10034064 [exp]	9.5	0.9043
AT1G18950			DDT domain superfamily (.1)		Lus10004259 [exp]	10.5	0.9005
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	11.3	0.9054
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	12.3	0.9028
AT2G04540			Beta-ketoacyl synthase (.1)		Lus10033810 [exp]	14.2	0.8633
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10018778 [exp]	14.5	0.8912
AT1G29350			Kinase-related protein of unkn...		Lus10025382 [exp]	14.7	0.8883

Compare expression of checked genes

Lus10035892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.