Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24490 208 / 2e-64 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G14180 91 / 5e-20 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT3G11100 86 / 3e-19 Trihelix sequence-specific DNA binding transcription factors (.1) AT5G05550 83 / 4e-18 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G10030 81 / 3e-16 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G58630 78 / 6e-16 Trihelix sequence-specific DNA binding transcription factors (.1) AT1G54060 72 / 1e-13 Trihelix ASIL1 6B-interacting protein 1-like 1 (.1) AT3G54390 67 / 3e-12 Trihelix sequence-specific DNA binding transcription factors (.1) AT2G44730 66 / 1e-11 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G24860 62 / 1e-10 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025772 [exp] 523 / 0 AT3G24490 223 / 3e-70 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10017725 [exp] 206 / 7e-63 AT3G24490 243 / 1e-77 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10033094 [exp] 206 / 7e-63 AT3G24490 238 / 6e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10019388 [exp] 179 / 5e-52 AT3G24490 200 / 2e-60 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10007273 [exp] 90 / 4e-20 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025406 [exp] 89 / 8e-20 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 88 / 1e-19 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 85 / 2e-19 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10020652 [exp] 71 / 6e-13 AT5G16860 344 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G179800 [exp] 337 / 1e-113 AT3G24490 206 / 2e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.003G056000 [exp] 323 / 6e-108 AT3G24490 205 / 8e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.018G075500 [exp] 231 / 8e-73 AT3G24490 252 / 1e-81 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.001G113600 [exp] 89 / 6e-20 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 89 / 9e-20 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.T126206 [exp] 88 / 3e-19 AT3G14180 173 / 9e-50 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.003G200000 [exp] 88 / 4e-19 AT3G14180 172 / 2e-49 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.014G051200 [exp] 73 / 4e-14 AT2G44730 239 / 3e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.002G139500 [exp] 73 / 5e-14 AT2G44730 252 / 3e-81 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.006G117300 [exp] 73 / 6e-14 AT3G10030 591 / 0.0 aspartate/glutamate/uridylate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF10545 [flax] [poplar] MADF_DNA_bdg Alcohol dehydrogenase transcription factor Myb/SANT-like
Representative CDS sequence Show only first row Show all	>Lus10035893 pacid=23141011 polypeptide=Lus10035893 locus=Lus10035893.g ID=Lus10035893.BGIv1.0 annot-version=v1.0 ATGGATAAAAACTCGTATGAAGCTCTACAGCAGGGATACAATCCTCTGAACCAGTACGGAAGTGAGGATGACGATGATGATGAGGAGGAGGAGGAGCTCT CCATGGATGATGAACACTTGGGAGATGAAGATGCTAGAGATAATAATCAAAACATTAGCAATATCCAAGGGGCAAGTAATGATGTAGACAATGACGAGGA TGAGGATGATGGATTTTACGAGGAAGCAGATGAAGATGAGGATGATGCTGGGGTCGGTAATGCTGATATAGGAAGGCACCCTAAGAAGCGGAAGCTAATG AGCCTCTCATCAAGTTATGAATTTGCTCCACGTGCGCCACCATTGGTTCCTATTGCAAAACCATTGCTTGTTGGAGGAAGAAATCCTCTTACTGACTGGA CCGAACAAGAAACATTTGCTCTATTAGATGCATGGGGTGACAAGTTCTTGCAGCGTGGGAGGAAAAGTCTGCGTTCGGACGAGTGGCTAGAAGTTGCAGA TAAGGTTTCAGAAGTATCCACGATTGAGAGAACAGACACACAGTGTAAGAACCGTTTGGATACGGTGAAGAAGAAGTACAAGAAAGAGAAGGGTAGGATG GTTGCTGGTTCTTGTACTAACAGCACTTGGGTTTACTTCAGAAAGATGGACATGCTCATGTCACAGCAAGGAGGAGGAAAAGGACTTTCTTGTGGTTTGG ATTCTGGGGAGTATGTATTCATGAATCCAAAAGCATATCTCAATCGTGCAAACGGGTTTGGCGAGATGCGAGACAGTCCCGGAAACTCGGAATCTGGTGA TGATGACGATATTTCAGATGGGCTCCCACCAAAGAAGAGGTGGTGTCGTAGTAGAGGGCGAAATGAAGAGGAGGGATCTTCCTCTTTCCATTTGCTGGCT GATTCTATTGAGAGATTCAGTGAGATATATGAGAAGATTGAGACTAGTAAGAGGCAACAAATGGTGGAGCTAGAGAAGATGAGGATGGACTTCCACAGGG ATCTGGAAATGCAGAGAAGAGAGATCATGGAAAGAGCGCATTTAGATATGGCGAAAATCGGAGGAAGTGGAGATGATGAGGAACAAGACATTTCTGGAGA AAGTGCAAGTGCTTGA
AA sequence Show only first row Show all	>Lus10035893 pacid=23141011 polypeptide=Lus10035893 locus=Lus10035893.g ID=Lus10035893.BGIv1.0 annot-version=v1.0 MDKNSYEALQQGYNPLNQYGSEDDDDDEEEEELSMDDEHLGDEDARDNNQNISNIQGASNDVDNDEDEDDGFYEEADEDEDDAGVGNADIGRHPKKRKLM SLSSSYEFAPRAPPLVPIAKPLLVGGRNPLTDWTEQETFALLDAWGDKFLQRGRKSLRSDEWLEVADKVSEVSTIERTDTQCKNRLDTVKKKYKKEKGRM VAGSCTNSTWVYFRKMDMLMSQQGGGKGLSCGLDSGEYVFMNPKAYLNRANGFGEMRDSPGNSESGDDDDISDGLPPKKRWCRSRGRNEEEGSSSFHLLA DSIERFSEIYEKIETSKRQQMVELEKMRMDFHRDLEMQRREIMERAHLDMAKIGGSGDDEEQDISGESASA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10035893 [exp]	0	1
AT2G17787			unknown protein		Lus10017274 [exp]	1.7	0.9256
AT1G78070			Transducin/WD40 repeat-like su...		Lus10041102 [exp]	2.4	0.9199
AT5G47860			Protein of unknown function (D...		Lus10008591 [exp]	3.9	0.9079
AT2G17787			unknown protein		Lus10013567 [exp]	6.3	0.9040
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Lus10020027 [exp]	8.2	0.9052
AT1G01750		ADF11	actin depolymerizing factor 11...		Lus10008489 [exp]	8.8	0.9015
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10027334 [exp]	8.8	0.8859
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10019188 [exp]	9.7	0.8805
AT3G60300			RWD domain-containing protein ...		Lus10009773 [exp]	11.7	0.8816
AT1G11330			S-locus lectin protein kinase ...		Lus10015422 [exp]	11.7	0.8940

Compare expression of checked genes

Lus10035893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.