Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60560 1118 / 0 SWIM zinc finger family protein (.1.2) AT4G13970 592 / 0 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025765 [exp] 1404 / 0 AT1G60560 1112 / 0.0 SWIM zinc finger family protein (.1.2) Lus10003970 [exp] 585 / 0 AT4G13970 964 / 0.0 zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G106000 [exp] 1174 / 0 AT1G60560 1192 / 0.0 SWIM zinc finger family protein (.1.2) Potri.006G245800 [exp] 656 / 0 AT1G60560 649 / 0.0 SWIM zinc finger family protein (.1.2) Potri.014G054600 [exp] 617 / 0 AT4G13970 1033 / 0.0 zinc ion binding (.1) Potri.002G140800 [exp] 590 / 0 AT4G13970 940 / 0.0 zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04434 [flax] [poplar] SWIM SWIM zinc finger
Representative CDS sequence Show only first row Show all	>Lus10035898 pacid=23141107 polypeptide=Lus10035898 locus=Lus10035898.g ID=Lus10035898.BGIv1.0 annot-version=v1.0 ATGGATATTATTGAATCAATCTTCAGTCTTCCTGTTCAAGATCCTCCAGAGGAGGAATTTTCTGCTGCTGATTTGACTTGGACCAAGTTTGGAACTGCTG ATCATTACGATGATGTTGCTGTAATTCCATATAACCGAGTTGATACATTTATAATTGGGGAATGCACTAATGTCGAATGTCCAACACGCTTCCATATTGA AAGGGGGAGGAAACGTTCTAAGGGAAGCTTGAAGGAGTATAAGAGTGATGAATATTTGGAGTATAAACTCTATTGGTGCTCATTTGGACCTGAGAATTAT GGGGAGGGTGGAAGCATATTACCTAGTCGTAGATATCGGCTTAATACTCGAAATCGTGCTGCTAGGCCTCAGTCCATGCGTGGCTGCACATGTCATTTTG TGGTGAAGCGTCTATATGCTCTTCCATCACTTGCACTCATTGTATATAACGAAAGGCGGCATGTAAATAAATCAGGGTTTGTCTGCCACGGGCCACTTGA TAAAGATGCCATTGGCCCTGGAGCAAAGAAAATCCCATATATTTGCAATGAGATTCAGCAACAAACGATGTCCATGATTTATCTAGGGATCCCAGAGGAG AATGTGTTGGAGAAGCACATTGAGGGTATTCAAAGATATTGTGGTGCAAATCAAAAAGTCGATAGCCTTGCTTCTACATATGTGCAAAAGCTTGGCATGA TTATCAAACGTTCAACTCACGAGTTAGATTTAGACGATCAGGCCAGTATCAAGCTGTGGGTTCAGCGCAATAAGAAATCAATTTTCTTTTATCAAGACAA TTCTGGGACGGATGCTTTCGTTTTGGGCATTCAAACAGAGTGGCAGTTGCAACAAATGATAAGATTTGGTCATCATAGTCTTATTGCTGCTGATTCAACA TTTGGCATTAAGAGACTCAAGTACCCATTAAGCACGCTGCTTGTGTTCGACTCAAGGCAACATGCACTTCCTGTTGCTTGGATCATCACTCGTAGCTTTG CAAAACAAGATGTTGCAAGATGGATGAAGGCTTTACATGGGAGAGCTTCATCTATGGAGCCCGGATGGAAGATTAATGGATTTATAATTGATGATGCTGC AGCAGAGGTTGATCCCATAAGGGATATCTTCAGCTGCCCTGTGCTATTCTCACTCTGGCGTGTACGTCGATCATGGCTGCGAAATATTGTTAGAAAATGC AGTGGCATAGAAGTTCAGCGCGAGGTTTTTAAACGGCTGGGGAGAATTGTATATAGTATTTGGAGTGGAGCAGATGCTTTGACTGCTTTGGAAGAATTAA CCCGTGATTTCATTGATCAAACTTCATTCATAGAGTACTTTGAAGCCTCATGGATGCCAAAGATAGAAATGTGGCTTTGTATGATGAAAACACTTCCTCT GGCAAGCCAAGAGGCTTCTGGTGCGATAGAAGCTTATCATGTTAAGCTAAAAGCAAAATTGTTTGATGATTCACATCTTGGTGCTCGCCAAAGAGTAGAT TGGTTAGTACACAAGCTGACAACAGAATTGCACTCTAGTTACTGGGTGGATAGGTATGCAGATGAAAGCGGTTGTTTTAACAATGTGAAGGAAGAATATG TATGTTCGACGTCATGGTACAGAGCACTGCAAATCCCTGATTCTGCAGTGTCATTGGACGAGGAAGAGAAGGAGGTGTTTGCCAAGGTCTCAAGTCAAAA GGATGGGAAAACAGGCCATACAGTATGGAATCCCGGGTCCGAATTTGCGTTTTGTGATTGTACATGGTCATTGCGAGGAAACCTGTGCAAGCATGTGATC AAGGTGAAGATGATGCTAGAATCTGAAGAAGGTAGTCGTTCAATGTCATTCCAGTCGCTGGAAAAAGTATTGGGGGAGATGTGGGAAATGCCAATGGATG GTACAGTTGAACTAGATGTTTGCATGGCGTGGGCTGTGAAGATGGCTGATCAAATGAAGCAAGCAGTGGAACTGAGTGGCTCAAATGATATTGGTTCAGT GGTAAATAGCAGGATGGCATTGAAGTGGGGTTGTAAGAAAGGGAGAACATCTGTTGGCATCCCTCGTCTTCCAAAGAGTGGTTCTAACTCTACAAAAAGT AAAATGAGCCGAAAGCGTAAGAGACTGCGTTGTAGGTAG
AA sequence Show only first row Show all	>Lus10035898 pacid=23141107 polypeptide=Lus10035898 locus=Lus10035898.g ID=Lus10035898.BGIv1.0 annot-version=v1.0 MDIIESIFSLPVQDPPEEEFSAADLTWTKFGTADHYDDVAVIPYNRVDTFIIGECTNVECPTRFHIERGRKRSKGSLKEYKSDEYLEYKLYWCSFGPENY GEGGSILPSRRYRLNTRNRAARPQSMRGCTCHFVVKRLYALPSLALIVYNERRHVNKSGFVCHGPLDKDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEE NVLEKHIEGIQRYCGANQKVDSLASTYVQKLGMIIKRSTHELDLDDQASIKLWVQRNKKSIFFYQDNSGTDAFVLGIQTEWQLQQMIRFGHHSLIAADST FGIKRLKYPLSTLLVFDSRQHALPVAWIITRSFAKQDVARWMKALHGRASSMEPGWKINGFIIDDAAAEVDPIRDIFSCPVLFSLWRVRRSWLRNIVRKC SGIEVQREVFKRLGRIVYSIWSGADALTALEELTRDFIDQTSFIEYFEASWMPKIEMWLCMMKTLPLASQEASGAIEAYHVKLKAKLFDDSHLGARQRVD WLVHKLTTELHSSYWVDRYADESGCFNNVKEEYVCSTSWYRALQIPDSAVSLDEEEKEVFAKVSSQKDGKTGHTVWNPGSEFAFCDCTWSLRGNLCKHVI KVKMMLESEEGSRSMSFQSLEKVLGEMWEMPMDGTVELDVCMAWAVKMADQMKQAVELSGSNDIGSVVNSRMALKWGCKKGRTSVGIPRLPKSGSNSTKS KMSRKRKRLRCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60560			SWIM zinc finger family protei...		Lus10035898 [exp]	0	1
					Lus10006003 [exp]	2.6	0.8627
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10035541 [exp]	4.7	0.8440
AT1G25260			Ribosomal protein L10 family p...		Lus10001072 [exp]	7.2	0.8359
AT1G13330		AHP2	Arabidopsis Hop2 homolog (.1)		Lus10035033 [exp]	7.9	0.8049
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10005905 [exp]	9.7	0.8052
AT4G21192			Cytochrome c oxidase biogenesi...		Lus10019246 [exp]	10.7	0.8289
AT3G57000			nucleolar essential protein-re...		Lus10007483 [exp]	15.4	0.8086
AT5G61970			signal recognition particle-re...		Lus10040614 [exp]	17.2	0.7993
AT1G61780			postsynaptic protein-related (...		Lus10002066 [exp]	17.7	0.8351
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030600 [exp]	17.7	0.8366

Compare expression of checked genes

Lus10035898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.