Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80420 302 / 5e-101 ATXRCC1 BRCT domain-containing DNA repair protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025764 [exp] 600 / 0 AT1G80420 326 / 3e-110 BRCT domain-containing DNA repair protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G178100 [exp] 369 / 3e-127 AT1G80420 339 / 2e-115 BRCT domain-containing DNA repair protein (.1.2.3.4) Potri.005G182500 [exp] 44 / 0.0002 AT1G77320 1011 / 0.0 meiosis defective 1, transcription coactivators (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain
Representative CDS sequence Show only first row Show all	>Lus10035899 pacid=23141252 polypeptide=Lus10035899 locus=Lus10035899.g ID=Lus10035899.BGIv1.0 annot-version=v1.0 ATGAGTTCTGGAGATAGCGGCGGCAAGAAGCGAAGTCTCCCTTCCTGGATGACTTCAGACGACAATGCCACTGGAGAGGACGGGCGTCACAACCCAAAAA GCGGCGACAAAGACAAAGACGGCAGTAGCCCTTTACCCACCAAAGGTTCTGCAGGACCCAGTTCAAGTTCGCCAACATTCTCTAAGCTTTTGGAAGGGGT GGTGTTCGTATTGTCCGGGTTTGTTAATCCAGAACGAGCTACGTTACGGTCACATGCGCTGGAAATGGGTGCCGAATATCGACCTGACTGGGGCTCAGAC TCTACTCTCTTGATTTGCGCTTATTCAAATACTCCCAAGTTTCGTCAAGTTGAGTCCTTATGCGGTACTATTGTCAGGAAGGAGTGGGTATTAGAGTGTT ATACCCAAAAGAGGCTCCTTGAGATTGATAGCTATCTCATTCACGCTGGGAAGCCCTGGAGAAAGAGCCGGGATTCTGCTGCTGAAATTAGTCATCAAAA GGAACCTCCTCGTAAAAAATTTGCAAAAGAAGCTGAAAGTTTACCACATTCACGGCCATCTGCATCCGCATCATCAAATAGTAAGACTTCCAAGTCCGCT GAGGAGAAATTTCCCAGTTCTGAAGTGAAGAAATGGGCAGTCGACGATCTTAACAAAACCATCTCGTGGCTAGAGAGTCAAGATGAAAAACCAGAGCCAA GTGAGATAAATCAAATAGCAGCAGAAGGTATCATAATTTGCTTACAAGATGCTATTGATTCCATTGAGCAAGATCAGGATATCTGCAAAATTGCGAAGCA GTGGAATGTTGTGCCCCGTGCAATTGAGGAGCTGGTAAAGCTTTCAGGCGGTAGAAATGAGTCAGCCTCTTGTCAAAAGGAAGATCTTTGTAAACAAGCC AAAGAGTTTAAAGAAACGTACGAGGTTGCACTTAGAAGTTCAGAGCCCAACTCCAACACAGAGACCAAAAGGATGAAGAAGAGTGCAGGAGGAGATAGGA ATGGGAAAGGGAAGCCCAGTGATGGGTATGACAGCGATGAAACTATTGAGATGACTGAAGAAGAAATTCGCGTCGCCTCTAAACTATGTGCGTAG
AA sequence Show only first row Show all	>Lus10035899 pacid=23141252 polypeptide=Lus10035899 locus=Lus10035899.g ID=Lus10035899.BGIv1.0 annot-version=v1.0 MSSGDSGGKKRSLPSWMTSDDNATGEDGRHNPKSGDKDKDGSSPLPTKGSAGPSSSSPTFSKLLEGVVFVLSGFVNPERATLRSHALEMGAEYRPDWGSD STLLICAYSNTPKFRQVESLCGTIVRKEWVLECYTQKRLLEIDSYLIHAGKPWRKSRDSAAEISHQKEPPRKKFAKEAESLPHSRPSASASSNSKTSKSA EEKFPSSEVKKWAVDDLNKTISWLESQDEKPEPSEINQIAAEGIIICLQDAIDSIEQDQDICKIAKQWNVVPRAIEELVKLSGGRNESASCQKEDLCKQA KEFKETYEVALRSSEPNSNTETKRMKKSAGGDRNGKGKPSDGYDSDETIEMTEEEIRVASKLCA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80420		ATXRCC1	BRCT domain-containing DNA rep...		Lus10035899 [exp]	0	1
AT4G28600		NPGR2	no pollen germination related ...		Lus10007743 [exp]	1.0	0.8377
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Lus10031301 [exp]	12.5	0.7849
AT3G45740			hydrolase family protein / HAD...		Lus10008416 [exp]	14.9	0.7450
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10028635 [exp]	20.6	0.7843
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	23.2	0.7949
AT3G60660			unknown protein		Lus10036493 [exp]	27.9	0.7682
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Lus10029958 [exp]	30.6	0.7525
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10017379 [exp]	33.1	0.7434
AT2G41990			unknown protein		Lus10003341 [exp]	34.9	0.7504
AT1G52630			O-fucosyltransferase family pr...		Lus10036089 [exp]	47.1	0.6974

Compare expression of checked genes

Lus10035899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.