Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08510 268 / 1e-86 FATB fatty acyl-ACP thioesterases B (.1) AT3G25110 185 / 5e-55 ATFATA fatA acyl-ACP thioesterase (.1) AT4G13050 177 / 5e-52 Acyl-ACP thioesterase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025762 [exp] 640 / 0 AT1G08510 268 / 2e-86 fatty acyl-ACP thioesterases B (.1) Lus10025763 [exp] 537 / 0 AT1G08510 270 / 1e-87 fatty acyl-ACP thioesterases B (.1) Lus10035900 [exp] 530 / 0 AT1G08510 278 / 1e-90 fatty acyl-ACP thioesterases B (.1) Lus10033072 [exp] 285 / 4e-93 AT1G08510 605 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10017751 [exp] 285 / 5e-93 AT1G08510 602 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10007942 [exp] 210 / 8e-64 AT1G08510 288 / 6e-94 fatty acyl-ACP thioesterases B (.1) Lus10013480 [exp] 209 / 9e-64 AT1G08510 287 / 2e-93 fatty acyl-ACP thioesterases B (.1) Lus10000365 [exp] 205 / 4e-62 AT1G08510 274 / 2e-88 fatty acyl-ACP thioesterases B (.1) Lus10034617 [exp] 201 / 1e-60 AT1G08510 275 / 6e-89 fatty acyl-ACP thioesterases B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G177900 [exp] 298 / 3e-98 AT1G08510 339 / 5e-114 fatty acyl-ACP thioesterases B (.1) Potri.001G177600 [exp] 297 / 5e-98 AT1G08510 343 / 2e-115 fatty acyl-ACP thioesterases B (.1) Potri.006G155800 [exp] 285 / 5e-93 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.006G157200 [exp] 285 / 5e-93 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.018G072700 [exp] 276 / 2e-89 AT1G08510 611 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.012G101500 [exp] 228 / 3e-71 AT1G08510 329 / 4e-110 fatty acyl-ACP thioesterases B (.1) Potri.015G099600 [exp] 220 / 5e-68 AT1G08510 330 / 2e-110 fatty acyl-ACP thioesterases B (.1) Potri.012G051400 [exp] 208 / 1e-63 AT1G08510 297 / 1e-97 fatty acyl-ACP thioesterases B (.1) Potri.010G117400 [exp] 207 / 3e-63 AT1G08510 294 / 2e-96 fatty acyl-ACP thioesterases B (.1) Potri.002G245600 [exp] 171 / 2e-49 AT3G25110 521 / 0.0 fatA acyl-ACP thioesterase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF01643 [flax] [poplar] Acyl-ACP_TE Acyl-ACP thioesterase
Representative CDS sequence Show only first row Show all	>Lus10035901 pacid=23141130 polypeptide=Lus10035901 locus=Lus10035901.g ID=Lus10035901.BGIv1.0 annot-version=v1.0 ATGGCTTCGCTCGCAAGCACCTTAATGTTCAGCTCCAATGTCGAATCTAAGTCCCTACCCATCGGCTTGGGGTCAGGCCAAAGACCACGAGGATGTGTAG TCTTTGGCCTTGTAGGAAAGCAAGGTGCGGTGGCCAGTACTACTAGCACTAGCGTTCTGTCACTAACCAAGACCCTCTCGTTGCCACCAACTCCGGTACT GACAACTACTGATCACGACGATGATATTGAACATCGTCGTGCTATAGTAGACAGTGGAAGATTGAACGGACTGCTCAATTTCGCAGTGGAAACAGGGGTG CAGAACGGGCTGGTTTACAGGCAACATGTTGTCGTCAAATCATTCGAAATCGGGCCAGACAGGAAAATCACCATGGCTGCTTTGATGAACCATTTGCAGG ATACGTCCCTGGGCCACACTTCAAGAATGGGGATAGTGGCAGATGGGTTCGGTGGAACTTCGTACATGAGAAAAAATAACCTTTGCTGGGTTATCACTTC TACACAAGTGATGGTGAATCGCTATCCTTCATGGGGAGAAGCGATCGTGCTGGAACATTGGTTTTATGAGTCTGGGAAGAACGGCTTGGGTAATGACTGG CTTATCCGTGACGCCAAGTCTGGAGAAGTTTTGGTTCGAGCCACCAACGTCTGTGTGTTGATGAACACGGCAACAAGAAGGCTATCCAAGATTGTGAAAG AAGTGAGAGACGAGTTCGCCCCGCATTTCTTGAGGCTTTCGCAAAGCGTTGCCCCGAGAGATGAGCGCAAAATACCACGCGTGGACTTTGAATCCGCACA TAATGTTCGAACATCGATACAGCCTGGTTGGTACGATCTGGATATCAATAACCACGTCAGTAACATCAAGTACATTGACTGGATCATTGGGGGTGCTCCG CGTTCGATACTGGAGAGTCGAGAACTTTGTGGAATGACGTTGGAATACAAGAAAGAGTGCAGGATTGACGATGCTGGACTTCAGTCGCTGTCCAAGATAG CGGGAAAGACCTGGGACGACGATCGTGTGGAGTTGGAGCATTTGCTTTGTCTGGAAGGTGGTTCGGAAATCATGAGGGCTAGAACTATCTGGCGTTCTAA ATATAATTATGCAACAACTTCGTCTTCTGCCGCTGCTGCTTCTGTTCTAAATAAAAATTAG
AA sequence Show only first row Show all	>Lus10035901 pacid=23141130 polypeptide=Lus10035901 locus=Lus10035901.g ID=Lus10035901.BGIv1.0 annot-version=v1.0 MASLASTLMFSSNVESKSLPIGLGSGQRPRGCVVFGLVGKQGAVASTTSTSVLSLTKTLSLPPTPVLTTTDHDDDIEHRRAIVDSGRLNGLLNFAVETGV QNGLVYRQHVVVKSFEIGPDRKITMAALMNHLQDTSLGHTSRMGIVADGFGGTSYMRKNNLCWVITSTQVMVNRYPSWGEAIVLEHWFYESGKNGLGNDW LIRDAKSGEVLVRATNVCVLMNTATRRLSKIVKEVRDEFAPHFLRLSQSVAPRDERKIPRVDFESAHNVRTSIQPGWYDLDINNHVSNIKYIDWIIGGAP RSILESRELCGMTLEYKKECRIDDAGLQSLSKIAGKTWDDDRVELEHLLCLEGGSEIMRARTIWRSKYNYATTSSSAAAASVLNKN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10035901 [exp]	0	1
AT5G46230			Protein of unknown function, D...		Lus10001891 [exp]	2.0	0.8630
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027989 [exp]	8.3	0.7685
AT1G54940		PGSIP4	plant glycogenin-like starch i...		Lus10031507 [exp]	12.4	0.7742
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10002894 [exp]	15.0	0.8386
AT3G18180			Glycosyltransferase family 61 ...		Lus10016707 [exp]	15.9	0.8114
AT2G21100			Disease resistance-responsive ...		Lus10027834 [exp]	19.2	0.8263
AT2G45220			Plant invertase/pectin methyle...		Lus10027206 [exp]	24.5	0.7594
AT1G01700		ATROPGEF2, ROPG...	RHO guanyl-nucleotide exchange...		Lus10036352 [exp]	36.6	0.7906
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10016659 [exp]	37.1	0.7970
AT1G01700		ATROPGEF2, ROPG...	RHO guanyl-nucleotide exchange...		Lus10014779 [exp]	38.4	0.7162

Compare expression of checked genes

Lus10035901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.