Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14746 72 / 2e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025761 [exp] 266 / 5e-91 AT4G14746 79 / 6e-18 unknown protein Lus10039368 [exp] 73 / 2e-15 AT4G14746 164 / 1e-50 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G176800 [exp] 112 / 3e-30 AT4G14746 87 / 8e-21 unknown protein Potri.003G057700 [exp] 99 / 8e-26 AT4G14746 83 / 1e-19 unknown protein Potri.008G156800 [exp] 71 / 5e-15 AT4G14746 176 / 1e-55 unknown protein Potri.010G082500 [exp] 69 / 2e-14 AT4G14746 187 / 4e-60 unknown protein Potri.005G051900 [exp] 67 / 2e-13 AT4G14746 120 / 1e-33 unknown protein Potri.013G039300 [exp] 64 / 2e-12 AT4G14746 115 / 9e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035902 pacid=23141071 polypeptide=Lus10035902 locus=Lus10035902.g ID=Lus10035902.BGIv1.0 annot-version=v1.0 ATGGACACACAGATCGGCAGCTTTGCGCTCGCGTGGGCGTGGCTTATTACTACTTCTCTGCAGGGTCTCACCATTCTGCCCACATCTGCCGCTCCCACGG TAACTAATGGCTTCCTCGGCGGTGACTTCCTTGGTGATTTGGTTTGCGAATTCACGGATTGCGGGAATGGAAAGTGCAAGGCGGCGTCGAAAGGGTTGGG TGGGTTTGAGTGTGAGTGCGATCCTGGCTGGAAGACTCACAAAGCTGCTCCTTACACTTTCCCTGCTTGCATTCTCCCTAACTGCTCTGTTGATCTTGGG TGTGACAAGACGGCTCCGGCGCCTGTAGCTCCGGCATCAGTATTGCTCTCCGAAGCCAAAGCGTGCCACATGATATGGTGCGGAGAAGGAGAGTGCATTA AAGGAGATGAGAATGGGAGATCAGGTGGATACCACTGCCAGTGCCACAACGGTGCCAGCAATATGTTCAACAACGCTTCTTGGGCTTGCTTCAAACCATG TTCGCTTGGATCAGATTGCTATACTATCCTAACTTCTCCCCACAACCTCCAAGCACCTCCTCCGAACACCGTCGCTGCTCCTCCGCCAAATAACGGTAGT TTATTAATCACAACAATAATACAGTCGTTTGGATGA
AA sequence Show only first row Show all	>Lus10035902 pacid=23141071 polypeptide=Lus10035902 locus=Lus10035902.g ID=Lus10035902.BGIv1.0 annot-version=v1.0 MDTQIGSFALAWAWLITTSLQGLTILPTSAAPTVTNGFLGGDFLGDLVCEFTDCGNGKCKAASKGLGGFECECDPGWKTHKAAPYTFPACILPNCSVDLG CDKTAPAPVAPASVLLSEAKACHMIWCGEGECIKGDENGRSGGYHCQCHNGASNMFNNASWACFKPCSLGSDCYTILTSPHNLQAPPPNTVAAPPPNNGS LLITTIIQSFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14746			unknown protein		Lus10035902 [exp]	0	1
AT5G05280			RING/U-box superfamily protein...		Lus10036380 [exp]	7.3	0.9450
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Lus10022744 [exp]	9.7	0.9143
					Lus10022528 [exp]	9.8	0.9143
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	10.3	0.9450
AT3G50150			Plant protein of unknown funct...		Lus10005799 [exp]	12.6	0.9450
AT2G42000		AtMT4a	Arabidopsis thaliana metalloth...		Lus10022998 [exp]	13.6	0.8486
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10009630 [exp]	14.6	0.9450
					Lus10011605 [exp]	16.3	0.9450
					Lus10024141 [exp]	17.8	0.9450
					Lus10025268 [exp]	19.3	0.9450

Compare expression of checked genes

Lus10035902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.