Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025759 [exp] 233 / 1e-70 AT3G48710 328 / 1e-103 DEK domain-containing chromatin associated protein (.1) Lus10035905 [exp] 139 / 5e-37 AT3G48710 322 / 3e-103 DEK domain-containing chromatin associated protein (.1) Lus10022439 [exp] 120 / 3e-30 AT3G48710 335 / 2e-108 DEK domain-containing chromatin associated protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035904 pacid=23141233 polypeptide=Lus10035904 locus=Lus10035904.g ID=Lus10035904.BGIv1.0 annot-version=v1.0 ATGGCGAGCGGAACCCTAGAGGAGAACACGAAACCGGAGGAGGAAGCTCCTCTTGCGCGCAAAGAGGATCTCAAGCCCGAACAAGTGGACAAACAGAAAG CTGACGAGGATATTAACGAAAAGCAAGAGGATGTGGACGAGAAGATGCAAGACAAGCACGGCGAAGCTGACGCTGAAATGAAAGATAAGGATGAGCAAGT GGACGCCTCCAGTCGGGACGAAGTGGACGCGGAGATGACAGACAAGCCAGAGGAAGTGGGGACTGATGTGAAAGCCAAGCTCGAGGAAGAAGAAGTGAAG AATAAGGAGGGCGAGGATATTAACGACAAGCACGAGGCTATGGACGAGAGCGTGAAAGGCAAGCACGACGAAGTTGACACAGAGGTCAAACACAAGGATG AGGAAGTGGACGCCGCCGATAGTAAGAGCATTCGGAACGAAGTGGACGTTGAGATGAAAGACAAGCCAGAGGAAGTGGAGACCGAGATGAAAGCCAAGCT GGAGGAAGAAGAAGAAGTGAAAAATAAGGAGGACGAAGAAGCCAAGCTGGAAGAAGAAGTTGTGAAAAATAAGGAGGGAGAGGATATTAACGAAAAGCAG GAGGATGTGGGCGATAAGATGAAAGACAAGCACGCCGAAGTTGATGCAGAGATGAAAGATAAGGATGAGGAAGTGGACGCCGCCGAGATTAAGAGCAGTC GGGACGAAGTGGACGCGGAGATGAAAGACAAGCCAGAGGAAATGGAGACCGAGATGAAAGCCAAGGATGGAATCAAGGAAGATGATATGCAAGGAGAGAA AGACCAACAACCGAGTCAAGAAAGCAAGGAGGAGCTCAGTAAGTGA
AA sequence Show only first row Show all	>Lus10035904 pacid=23141233 polypeptide=Lus10035904 locus=Lus10035904.g ID=Lus10035904.BGIv1.0 annot-version=v1.0 MASGTLEENTKPEEEAPLARKEDLKPEQVDKQKADEDINEKQEDVDEKMQDKHGEADAEMKDKDEQVDASSRDEVDAEMTDKPEEVGTDVKAKLEEEEVK NKEGEDINDKHEAMDESVKGKHDEVDTEVKHKDEEVDAADSKSIRNEVDVEMKDKPEEVETEMKAKLEEEEEVKNKEDEEAKLEEEVVKNKEGEDINEKQ EDVGDKMKDKHAEVDAEMKDKDEEVDAAEIKSSRDEVDAEMKDKPEEMETEMKAKDGIKEDDMQGEKDQQPSQESKEELSK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10035904 [exp]	0	1
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009580 [exp]	1.4	0.9232
AT1G75240	ZF_HD	ATHB33, ZHD5	zinc-finger homeodomain 5, hom...		Lus10037175 [exp]	4.5	0.8998
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10005893 [exp]	4.5	0.9179
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028225 [exp]	8.5	0.9027
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014380 [exp]	13.4	0.9062
AT1G14900		HMGA	high mobility group A (.1)		Lus10002284 [exp]	15.9	0.9104
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014381 [exp]	17.2	0.9030
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10011567 [exp]	20.6	0.7975
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	22.3	0.9033
AT2G20515			unknown protein		Lus10022928 [exp]	22.9	0.9080

Compare expression of checked genes

Lus10035904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.