Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48710 297 / 6e-94 DEK domain-containing chromatin associated protein (.1) AT5G63550 229 / 5e-67 DEK domain-containing chromatin associated protein (.1.2) AT5G55660 183 / 5e-49 DEK domain-containing chromatin associated protein (.1) AT4G26630 168 / 8e-44 DEK domain-containing chromatin associated protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025759 [exp] 832 / 0 AT3G48710 328 / 1e-103 DEK domain-containing chromatin associated protein (.1) Lus10022439 [exp] 620 / 0 AT3G48710 335 / 2e-108 DEK domain-containing chromatin associated protein (.1) Lus10016746 [exp] 261 / 6e-79 AT3G48710 263 / 1e-81 DEK domain-containing chromatin associated protein (.1) Lus10035904 [exp] 141 / 2e-37 AT1G67120 44 / 1e-04 ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G102500 [exp] 286 / 2e-88 AT5G63550 248 / 3e-75 DEK domain-containing chromatin associated protein (.1.2) Potri.015G100700 [exp] 284 / 2e-87 AT5G63550 245 / 6e-74 DEK domain-containing chromatin associated protein (.1.2) Potri.011G093200 [exp] 196 / 3e-54 AT4G26630 199 / 6e-55 DEK domain-containing chromatin associated protein (.1.2) Potri.001G367400 [exp] 192 / 6e-53 AT5G55660 206 / 3e-57 DEK domain-containing chromatin associated protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08766 [flax] [poplar] DEK_C DEK C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035905 pacid=23141175 polypeptide=Lus10035905 locus=Lus10035905.g ID=Lus10035905.BGIv1.0 annot-version=v1.0 ATGAAAGACAAGCACGCCGAAGTTGATGCAGAGATGAAAGATAAGGATGAGGAAGTGGACGCCGCCGAGATTAAGAGCAGTCGGGACGAAGTGGACGCGG AGATGAAAGACAAGCCAGAGGAAATGGAGACCGAGATGAAAGCCAAGGATGGAATCAAGGAAGATGATATGCAAGGAGAGAAAGACCAACAACCGAGTCA AGAAAGCAAGGAGGAGCTCAGTTCTGAAAACCCTCTTGTACAAGGAAATGAGGAAGAGCCTGCCGAGAAAGCTGGCGGAGACAAAGAGGAGGAGGCTGAG AAAGATCTCGATGAAAAGGAAACAGAAGAAGAAGATACGATGAAACATAAGCAAGTTGCCAGCAAGAGTTCTGCCAAGGAACGGGAGAAGACTCCTGAAG CCATCGAGAAAAAACCCCCAAGCAGTGATCCGCCAACTGCCGAGGAAGCTGGCGGAGACATAGAGGAGGATGCTGAGAAAGATCTCAACAAGGAGAATGG CCAGGACGAAGGAGATGGCGAGGGTGTTGAAGAAGAAACAGAAGAAGAAAATATGGTGAAAAGTAAGCAAGTTTCCAGCAGGAGTTCTGCCAAGGAACGG GAGAAGATTCCTGAAGCCACCGAGAAGCAAACCCCAAGCAGTGATCGCCCAACTAGGGAGCGGAAGATGGTTGAGAGATACTCTTTTCCCGAGCGTGGAA GATCCACTGTCAAAAAGACCTTGTCGATAGAAAAGGGCCGTGGGACAGCCCTGAAGGATATTCCCAATGTGGCCTTCAAGTTGTCGAAGAGAAAATCTGA TGAGACTTTGCATATGCTTCACACTATACTTTTTGGAAAGAAAGGAAAGGTCCAAAGTATGAAGAGAAATATTGGAAGATTTTCTGGCTTCGTTTGGACT GGGAATGAGGAAAAACAAAAGTCAAGAATGAAGGAAAAGCTTGACAAGTGTGTTAAGGAAAGTCTTCTAGACTTCTGTGATGTACTCAATATTCAAGTAA CTAAAGCCACCGTGAGAAAGGAAGATCTCACTGTAAAAATCTTGGAGTTCTTGGAATCTCCTCATGCAACAACTGATGTTATGCTTGCTGACAAGGAACA GAAAGTCAAGAGGCGGAGGTCAATGACTGGGAAAAATTCAAGCCCTGGGGAAGCATCAGCTACACTAGCTAAGAGACAAAAACAGACATCCCAGTCTGAG AAAAAACAAACTCCCTCTTCCAAAGGTGACGAAGAAGAAGATGATGATAAGGTTGAATCAGAAGAACTGAATGATGACTCTCAAAGTGATGATGATGAGG CTCTTCCTCAAAAAGAGGAGAGTGATCAGGATGAGGACAGATCGGAAGAAAAGAATGACGATCCAAAGGAGGAAACACCAACCCAGAAGTCATCAAGGAA AACTGTTAAGGATACTTCAGGATTAAAAGCCAAGGAGAAAAGCACACTTCGCAAGAGCAGTGCCACCCCGAAGTCTGTGAAGAGTACATCAAGATCCAAC AAGTCATCTGCTCCTTCAGCAAAACCAACTCCAGATACAGATGCAGGTTCTGGTTCAGTTTCTAAATCAAAGGGACCTGCATCAAGGAAACGCAAGGCTG AAGAACAAGATGTTTCAGCGAAGGAAATCACTAAGAAAAAACTGGCAGGCGGCAAGTCAACTGGAAAAGTTTCTGCAAAAGATCAAGGGAAAGGCAAATC TAGGAAGAAGGCCAAGACTGAACCCACAAGAGAAGAGTTGCATGCAGTTGTTGTTGACATCCTGAAAGAAGTTGATTTCGATACAGCAACTTTGTCAGAT ATTCTCAGAAAACTTGGTAAACACTTCAACGTAGATATATCGCACAGAAAAGCAGAGGTGAAGGAGGCTATAACTGAGGTTATTAAGAACATGTCGGATG AGGAGGAAGAAGATGAAGATGATGATAATGCGGAAGAAGATGATGATTAG
AA sequence Show only first row Show all	>Lus10035905 pacid=23141175 polypeptide=Lus10035905 locus=Lus10035905.g ID=Lus10035905.BGIv1.0 annot-version=v1.0 MKDKHAEVDAEMKDKDEEVDAAEIKSSRDEVDAEMKDKPEEMETEMKAKDGIKEDDMQGEKDQQPSQESKEELSSENPLVQGNEEEPAEKAGGDKEEEAE KDLDEKETEEEDTMKHKQVASKSSAKEREKTPEAIEKKPPSSDPPTAEEAGGDIEEDAEKDLNKENGQDEGDGEGVEEETEEENMVKSKQVSSRSSAKER EKIPEATEKQTPSSDRPTRERKMVERYSFPERGRSTVKKTLSIEKGRGTALKDIPNVAFKLSKRKSDETLHMLHTILFGKKGKVQSMKRNIGRFSGFVWT GNEEKQKSRMKEKLDKCVKESLLDFCDVLNIQVTKATVRKEDLTVKILEFLESPHATTDVMLADKEQKVKRRRSMTGKNSSPGEASATLAKRQKQTSQSE KKQTPSSKGDEEEDDDKVESEELNDDSQSDDDEALPQKEESDQDEDRSEEKNDDPKEETPTQKSSRKTVKDTSGLKAKEKSTLRKSSATPKSVKSTSRSN KSSAPSAKPTPDTDAGSGSVSKSKGPASRKRKAEEQDVSAKEITKKKLAGGKSTGKVSAKDQGKGKSRKKAKTEPTREELHAVVVDILKEVDFDTATLSD ILRKLGKHFNVDISHRKAEVKEAITEVIKNMSDEEEEDEDDDNAEEDDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48710			DEK domain-containing chromati...		Lus10035905 [exp]	0	1
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034076 [exp]	1.0	0.8938
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019870 [exp]	12.4	0.8899
AT3G27360			Histone superfamily protein (....		Lus10031252 [exp]	13.3	0.8774
AT2G28740		HIS4	histone H4 (.1)		Lus10025964 [exp]	13.6	0.8798
AT2G26460		SMU2	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10027665 [exp]	13.7	0.8478
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10009538 [exp]	14.1	0.8666
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009579 [exp]	15.8	0.8755
AT5G49170			unknown protein		Lus10022872 [exp]	16.4	0.8481
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10022129 [exp]	21.9	0.8338
AT4G36970			Remorin family protein (.1)		Lus10039007 [exp]	22.3	0.8309

Compare expression of checked genes

Lus10035905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.