Plant FIBer expression Database

Lus10035906 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15550 530 / 5e-180 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025757
[exp]
1180 / 0 AT3G15550 587 / 0.0 unknown protein
Lus10025758
[exp]
691 / 0 AT3G15550 453 / 9e-155 unknown protein
Lus10034462
[exp]
43 / 0.0007 AT3G47490 239 / 8e-78 HNH endonuclease (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G058600
[exp]
671 / 0 AT3G15550 687 / 0.0 unknown protein
Potri.001G175500
[exp]
662 / 0 AT3G15550 706 / 0.0 unknown protein
Potri.009G004200
[exp]
44 / 0.0001 AT3G47490 241 / 2e-81 HNH endonuclease (.1.2.3)
PFAM info
Representative CDS sequence
>Lus10035906 pacid=23141035 polypeptide=Lus10035906 locus=Lus10035906.g ID=Lus10035906.BGIv1.0 annot-version=v1.0
ATGGCCTCAGCTTCTGATTACTGGTCTAAAGAAGAAGAAGAAGAAGAAGAAACAGCTGTGGACGCCACACTTGGCTACCCAAAAGCTTACGCCAAATGTT
GCAGAGATGGTGGCTTGGTCGGCATTTATCTGCACGGCCCTCCTTTCACCTTTACTCCCTATCACCCACTTCATCACCACGAGATTGAGAGTGCAAGAGA
TTTGGATCAAATGTTTCCGGTGCTGGATCCAAAGGCCAAACCCACGGCCAAGCTTAAGATTTTCGTCAGTCTGCTATGGAAGCAGCTCAACCATCTCGGG
AACGCTGGATTTGACCCTGAAGTAATCCGAGTAGATCCGTACGGAAATGTTGTGTATTTCCATGCGGACAAGGGTTCTCCCCTCTATTGGGACATTGACC
ACTGGTTTCCTTGCTCAAGAGGAGGATTGACTGTTCCTAGTAATTTGAGGATCTTACAGTGGCAAGTCTGTAAAAGGAAGCACAACAAGCTCGAATTTCA
AGTGCCGTGGTGGGATTTACAGCTGGGGATCTCTGTTAACCAGTTCCTATCCATTTTTGCTTCTTCCAACTCTGATTTCAGGAGGAGGGGGTTTTCGTTT
CTGTTCCTGGAAGGTGAGAATGAAGAAGTGAATGAATCCCAGACAGTGGAATCACATTCTTTCCCCCACCATTTCTCCGAATCAAAGAAAGAGCTAGGCC
TTGCCCCAGCCTCAATTGTGGTGTCTCGAAGAAGAGGAGAGCCGCACGATTCTTCTTCTTCGACTCCGTTGAAATCCTTGGATTTCAACAACAAACAGAT
GATGATGAGGCCATATTCTCCCATAGTTGCTGCAAAGAAAGCAGTGATGAAAGAAAATGAGGTGCCTGAATTCGGCCTGAATCCATACCAAGCGATAGCA
AAGGCAAGAGATTCACTGAAGCAGCGCAGAGAAGAAGAGGCTCAGAAACTTGTGGCGGAGATACAAAACTTGGATGTAGAAGTTGATGAAGTGATGAGAA
GCAGTAACAAGGAGAAGCTTGTAATTCAGGACCTGGAACTCGAACTAACCAAGCGAAGAAGAAGAGCAGAGAAGTGCAGGCGGCTTGCAGAGGCGCAGTC
TTCTTACAGGACCATGCTCGAGAAGATGATCCGAGATGCTATGCACCAGAGCGTGGTTTACAAGGAACAAGTGAGGCTGAACCAAGCAGCAACCAGTGCT
CTGATGGCGAGGCTAGAGGCTCAGAAGTCGATTTGCGATGCATCAGAGAAGGAACTCCACAAGAAGTTCAGGGAGAGGGATGCTTTGGAGAAAGAGATTA
GGCCTGAATGGGAGGAACAAGCCAGGAAGCGATCAAGGATGGATCATCATCATGTTGACTCAACAGATAACTATGATGAGGAGGAGGAGCAAGAGATAAT
AGATCCTCATAATAAAGCTCTTCTTTATCTGGAAGAGGATGATCAGTTGAAAGCATCTGAAGCAGATGATGGTATATCTCAAAATGAATATGACAAGTAT
GAGAGAACAGAGGATGAAAGGAAGAAGGATGAAGCTAACAAGCATGATGAACTAGTAGCTGCATTGGAAGACCAAGTTTTTATTGAGGAAAAGCTTCAAG
CCCTGGAAATAGTTGAAGAAAAGAAGCAGGAGGAAAAGGTTACACGACAACAAGCCAGAGAAGATAGAGAAGAAGATGAGGAGGAAAGCAGGAAGGTCCG
TGGTAAGGGAAATGTAGACAAGTGGCTGAAAATGTTGTTGGAGAACTCACAAGATCAAATTCAACCTCAACATATCCAAGCACCACCAACAACAACTATT
TTCAAGACCACTGACGACATAATCAACAGACTGGATGACAAGTTCCCATTGAAACAGCAAGAAAATATCAAGTGTGACGAGGCTGCTGCTGATGATGATG
ATGGTGAGAAACGGAGGAGGTTTGCAAGGAACAAGAGTTTTGATCAAGGTGAACATAGTAAAAAGGCACTTCCAAGGTCTGAGAGTGCCAGGACGCTACG
CCGTATCCCATCTTCCCCGTCACTGTTGATTTCCGGCGTTCGAAAAGGTGTTGAATCCATGTTCAAGATGAAGAACAAGAAGAAACTAATTCTACAATGA
AA sequence
>Lus10035906 pacid=23141035 polypeptide=Lus10035906 locus=Lus10035906.g ID=Lus10035906.BGIv1.0 annot-version=v1.0
MASASDYWSKEEEEEEETAVDATLGYPKAYAKCCRDGGLVGIYLHGPPFTFTPYHPLHHHEIESARDLDQMFPVLDPKAKPTAKLKIFVSLLWKQLNHLG
NAGFDPEVIRVDPYGNVVYFHADKGSPLYWDIDHWFPCSRGGLTVPSNLRILQWQVCKRKHNKLEFQVPWWDLQLGISVNQFLSIFASSNSDFRRRGFSF
LFLEGENEEVNESQTVESHSFPHHFSESKKELGLAPASIVVSRRRGEPHDSSSSTPLKSLDFNNKQMMMRPYSPIVAAKKAVMKENEVPEFGLNPYQAIA
KARDSLKQRREEEAQKLVAEIQNLDVEVDEVMRSSNKEKLVIQDLELELTKRRRRAEKCRRLAEAQSSYRTMLEKMIRDAMHQSVVYKEQVRLNQAATSA
LMARLEAQKSICDASEKELHKKFRERDALEKEIRPEWEEQARKRSRMDHHHVDSTDNYDEEEEQEIIDPHNKALLYLEEDDQLKASEADDGISQNEYDKY
ERTEDERKKDEANKHDELVAALEDQVFIEEKLQALEIVEEKKQEEKVTRQQAREDREEDEEESRKVRGKGNVDKWLKMLLENSQDQIQPQHIQAPPTTTI
FKTTDDIINRLDDKFPLKQQENIKCDEAAADDDDGEKRRRFARNKSFDQGEHSKKALPRSESARTLRRIPSSPSLLISGVRKGVESMFKMKNKKKLILQ

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G15550 unknown protein Lus10035906
[exp]
0 1
AT3G21620 ERD (early-responsive to dehyd... Lus10030024
[exp]
1.0 0.9795
AT5G27550 P-loop containing nucleoside t... Lus10004487
[exp]
3.2 0.9750
AT4G35730 Regulator of Vps4 activity in ... Lus10028383
[exp]
4.0 0.9674
AT5G51600 ATMAP65-3, PLE PLEIADE, ARABIDOPSIS THALIANA ... Lus10015684
[exp]
4.6 0.9738
AT1G44110 CYCA1;1 Cyclin A1;1 (.1) Lus10029700
[exp]
4.9 0.9699
AT1G71680 Transmembrane amino acid trans... Lus10036933
[exp]
5.5 0.9697
AT4G13370 Plant protein of unknown funct... Lus10019398
[exp]
6.0 0.9692
AT4G17000 unknown protein Lus10010744
[exp]
7.0 0.9677
AT5G26910 unknown protein Lus10037725
[exp]
7.4 0.9659
AT1G44110 CYCA1;1 Cyclin A1;1 (.1) Lus10042739
[exp]
7.9 0.9672

Lus10035906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.