Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46950 452 / 6e-154 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT2G46960 439 / 2e-149 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT4G27710 414 / 2e-139 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1) AT2G26710 295 / 2e-93 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14650 283 / 1e-88 CYP72A11 "cytochrome P450, family 72, subfamily A, polypeptide 11", cytochrome P450, family 72, subfamily A, polypeptide 11 (.1) AT3G14660 283 / 1e-88 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14690 279 / 2e-87 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14680 275 / 1e-85 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14640 275 / 1e-85 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14610 260 / 3e-80 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025756 [exp] 800 / 0 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10025755 [exp] 800 / 0 AT1G80300 923 / 0.0 nucleotide transporter 1 (.1) Lus10033044 [exp] 300 / 1e-94 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10016310 [exp] 279 / 3e-87 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10017771 [exp] 265 / 3e-82 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10010821 [exp] 264 / 3e-81 AT1G75130 522 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10026085 [exp] 255 / 5e-78 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10008423 [exp] 253 / 3e-77 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10042487 [exp] 246 / 2e-74 AT3G14690 604 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G022200 [exp] 454 / 3e-155 AT2G46950 527 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Potri.006G154500 [exp] 303 / 3e-96 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.018G070900 [exp] 297 / 4e-94 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.005G035200 [exp] 285 / 1e-89 AT1G75130 547 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.011G099400 [exp] 285 / 2e-89 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101500 [exp] 283 / 5e-89 AT3G14690 609 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G098800 [exp] 283 / 8e-89 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101401 [exp] 281 / 3e-88 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099800 [exp] 281 / 4e-88 AT3G14690 612 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101700 [exp] 281 / 6e-88 AT3G14690 606 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10035907 pacid=23141080 polypeptide=Lus10035907 locus=Lus10035907.g ID=Lus10035907.BGIv1.0 annot-version=v1.0 ATGGATTACGTACTACTGGGTGGCCTGGTGGTAGCTTTGCTGGTGATTCTAACAACCAATCTTTTGCTGCAGCTGTTGAAGACCCTCTTGTGGAGACCTT ATGCCTTAACCAAATACTTCCAGAAACAAGGGATCACTGGCCCTCCTTACCGTTTACTCTATGGATCTCTTCCGGAGATGAAACAACTCGGCCTAGAAGC CAAGCGCATGGTGTTGGATAACCACTCCAATGACATCACTCTCAAAATCATGCCTCACTATCACAACTGGTTCTCCAAATATGGAGATACTCTTCTGTAT TGGTACGGACTGGAGCCTAGGATTACTGTGATGGATCCTGAACTGGCCAAACAGATCTTGTCCAACAAGTTTGGTTTCTTCGTCAAATCCTTCTACAGGC CGTCTTTAGTGATAGGAGATGGGTTGGTTTTGTTAGATGGACCTGCGTGGGCTAGGCGGAGAAGGACTCTCAACCCTGCCTTCTCCATGGATAAGCTCAA GGTCTCTCTTGTTCTACTTCTTTTTTGGCTTCTTATACTTGAAAGTAATGATAACCAGAATGGCATCATGCACTTTAGAAATGGCTACCGAGTGGGGGAA ACAGTTGCTTCTGGATCTTCTGAGATAGAAGTGAATTCAGCCTTTCAGAAACTTACTGCTGATATTGCTCACACTTCCTTTGGAAGTAGCTACCTTGAAG GAATACAAGTCTTCAAAGCATTACTACATCTCCAGAGCCGCAATGCAGCTGTACTTACAAGTGTTTCATCCCTGGAACCCAGTATGTATCTTCCTACGCC ATCGAATCTGGAGATATGGAAGCTAGAGAGGGAACTTACTACCTCACTTCGGAGCATCTTTGAGAACAGGTTAAGATCGAATTCTGGCAAAGGTGGTGGT GGTGGTTATGGAGACGATCTCCTTGGTATTATGATTGAAGCCTCCGAATTGGCTGATGCTGCTGACACCAAGAGCAGCATCACTACTAGCAAGATGAACA TGAAAGAAATCATGGACGAATGCAGAACATTCTTCTTCACAGGCCACGAGACTACCTCCAATCTGTTAACATGGGCCATTTTCCTTGTTACCGAGCACCA AGAATGGCAGCAAATGCTCAGGGAAGAAGTGCTCAAGGAGTGTGGGATGAACATTCCAGATGCCGTTTCATTGCCAAAGCTCAAACTGATGAATATGGTG CAACTGGAGACACTGAGGCTATACAGCCCTGCAATAGAGACTCTGAGGAAGGAGACACTGACGCTATACAGCCCTGCAATAGAGACTCTGAGGAAGGCAA CTGAAGACATGAAACGGGGGAAGTTGGATCTACCAAAAGGAACCTCTTTATCAATCCCTATCATCATGATCCAGAGCAGCAAGGAATTCTGGGGAGAGGA CTCAAATGAGTTCAAGCCAATGAGATTCGAGAATGGAGTCTCTAATGCTGCAAAACACCCCAATGCTTTCCTGGCCTTCGGGATGGATTCAAGAGTTTGT ATTGGACAGAACTTCTCGATGATGGCTAAATCTGTGATTGCACTGCTCCTCCAGAGGTTTTCCTTCACCCTTTCTCCTCAATATAAGCATGCTCCGGTCA ACAACCTCACTTTGGAGCCACAATATGGCCTTCCTCTCATTGTTAAGCCTCTCCATATGTAA
AA sequence Show only first row Show all	>Lus10035907 pacid=23141080 polypeptide=Lus10035907 locus=Lus10035907.g ID=Lus10035907.BGIv1.0 annot-version=v1.0 MDYVLLGGLVVALLVILTTNLLLQLLKTLLWRPYALTKYFQKQGITGPPYRLLYGSLPEMKQLGLEAKRMVLDNHSNDITLKIMPHYHNWFSKYGDTLLY WYGLEPRITVMDPELAKQILSNKFGFFVKSFYRPSLVIGDGLVLLDGPAWARRRRTLNPAFSMDKLKVSLVLLLFWLLILESNDNQNGIMHFRNGYRVGE TVASGSSEIEVNSAFQKLTADIAHTSFGSSYLEGIQVFKALLHLQSRNAAVLTSVSSLEPSMYLPTPSNLEIWKLERELTTSLRSIFENRLRSNSGKGGG GGYGDDLLGIMIEASELADAADTKSSITTSKMNMKEIMDECRTFFFTGHETTSNLLTWAIFLVTEHQEWQQMLREEVLKECGMNIPDAVSLPKLKLMNMV QLETLRLYSPAIETLRKETLTLYSPAIETLRKATEDMKRGKLDLPKGTSLSIPIIMIQSSKEFWGEDSNEFKPMRFENGVSNAAKHPNAFLAFGMDSRVC IGQNFSMMAKSVIALLLQRFSFTLSPQYKHAPVNNLTLEPQYGLPLIVKPLHM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46950		CYP709B2	"cytochrome P450, family 709, ...		Lus10035907 [exp]	0	1
AT1G71110			unknown protein		Lus10013492 [exp]	16.6	0.8525
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Lus10018781 [exp]	16.9	0.8622
AT3G56310			Melibiase family protein (.1.2...		Lus10029046 [exp]	20.3	0.8555
AT4G24460		CLT2	CRT (chloroquine-resistance tr...		Lus10008964 [exp]	22.6	0.8394
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10015237 [exp]	44.1	0.8385
AT5G18640			alpha/beta-Hydrolases superfam...		Lus10012812 [exp]	44.3	0.8408
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10001201 [exp]	44.4	0.8108
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Lus10042126 [exp]	49.6	0.8269
AT4G16800			ATP-dependent caseinolytic (Cl...		Lus10010994 [exp]	55.7	0.8203
AT1G55200			Protein kinase protein with ad...		Lus10041608 [exp]	55.7	0.8239

Compare expression of checked genes

Lus10035907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.