Plant FIBer expression Database

Lus10035908 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80300 880 / 0 ATNTT1 nucleotide transporter 1 (.1)
AT1G15500 874 / 0 ATNTT2 TLC ATP/ADP transporter (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025755
[exp]
1060 / 0 AT1G80300 923 / 0.0 nucleotide transporter 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G175200
[exp]
937 / 0 AT1G80300 884 / 0.0 nucleotide transporter 1 (.1)
Potri.003G058900
[exp]
927 / 0 AT1G80300 945 / 0.0 nucleotide transporter 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0015 MFS PF03219 TLC TLC ATP/ADP transporter
Representative CDS sequence
>Lus10035908 pacid=23141192 polypeptide=Lus10035908 locus=Lus10035908.g ID=Lus10035908.BGIv1.0 annot-version=v1.0
ATGGAAGCTGTGCTTCAAACCAGAGGGCTTTTCTCGCTTCCTCCTAACCCTAAAACCCGAGGGTTGTATGCATCCCAGGGTTTAAAGCACAGGATTTCCG
CCTCAAAACCAAGAATCTCATCTGGGATTTCCTTATCTTCTTCTTCTTCTTCCAATGGGTTTCAAAAATTTCCGACCTTTGTGTCAAAGCCAAATGGTCT
GTCTCTGTTCCGAAACAACGGAAGTCTGCATATCTGCAAGGCAGAAGCTGCTGCTGCATCCGAAGGACAGCCTTTGATTGGCCAGGAGGGTGAGAAGAAG
AAGCTTTTAGGTGTTGAGGTTGCGACTCTGAAAAAGATTATTCCTCTGGGGTTGATGTTCTTTTGTATTCTTTTCAATTATACAATCCTGAGGGATACCA
AGGACGTGTTGGTTGTGACTGCTCAAGGGAGCAGCGCTGAGATTATTCCGTTTCTAAAAACTTGGGTGAATTTGCCTATGGCCATTGGGTTTATGCTGCT
CTATACAAAATTGTCTAACGTGCTGTCTAAGCAGGCACTTTTCTACACGGTAATCTTGCCCTTTATTGCCTTCTTTGGGGCTTTTGGCTTTGTTTTGTAT
CCCTTGAGCAATCATCTCCACCCTCATGTATTTGCCGATAAGCTCCTCAACGTGCTTGGACCGAGGTTTCTCGGTCCACTTGCTATTCTGAGGATTTGGA
CCTTCTCTTTGTTCTATGTCATGGCTGAATTGTGGGGAAGCGTTGTGGTTTCAGTGCTGTTCTGGGGATTCGCCAATCAGATCACTACTGTTGATGAAGC
AAAGAAATTCTACCCGTTGTTTGGACTTGGGGCAAATATTGCGTTGATTTTCTCGGGAAGGACAGTTAAATATTTCTCTAATCTCCGGAAGAATCTGGGT
CCCGGGGTTGATGGTTGGGCTGTGTCCCTCAAAGGAATGATGAGCATTGTTGTATTGATGGGTGGTGCCATCTGCTTCCTGTACTGGTGGGTCAATAGAT
CTGTTGCTCTTCCCACTCGCAGCAAGAAGAAGAAGGAAAAGCCAAAGATGGGTACAATGGAGAGCTTGAAATTCCTCATCTCTTCAAGATACATCAGAGA
TCTTGCTACTTTAGTTGTTGCTTATGGCATTAGCATCAACCTTGTTGAGGTGACATGGAAATCTAAGCTCAAGGCACAGTTCCCTAGTCCGAACGAGTAT
TCTGCATTCATGGGCGACTTCTCCACGGCTACTGGAATAGCAACATTCACTATGATGCTTGTAAGTCAATACATCTTCGACAAATATGGATGGGGAGCTG
CTGCAAAGATAACACCGACTGTGTTGCTTCTCACGGGAGTTGGGTTCTTCTCGCTACTTTTGTTCGGAGCTCCTCTTACACCGACACTTATGCAATTCGG
AATGACTCCTCTGCTTGCTGCTGTATATGTGGGTGCCCTGCAAAACATATTCAGCAATAGAGCCAAGTACAGCTTGTTCGATCCGTGCAAAGAAATGGCT
TACATTCCACTGGATGAGGAAACCAAGATTAAAGGGAAGGCAGCCATTGATGTGGTCTGCAACCCGCTTGGGAAGTCGGGCGGAGCTCTAATTCAACAGT
TCATGATCTTGACCTTTGGTTCACTTGCCAACTCGACACCATACCTCGGAGTGACGCTTCTGGGTATCGTGATTGCTTGGTTAGCTGCAGCTAGGTCCTT
GGATGGTCAATTCACCGCTCTGCGACGAGAGGAAGAGCTCGAGAAGGAGATGGAAAGGGCTGCTGCTGTCAAAATTCCGGTTGTATCTGACAATGACAAT
GAAAACGGGAATGGATCGCTTCGCAGTGGCTCTGGCTCCCCATTGAATCCTACAGCAGGAGGCTCAACGAGCAGCTCCTCAGGACCCTCAGCTTCCAAGT
TCTAG
AA sequence
>Lus10035908 pacid=23141192 polypeptide=Lus10035908 locus=Lus10035908.g ID=Lus10035908.BGIv1.0 annot-version=v1.0
MEAVLQTRGLFSLPPNPKTRGLYASQGLKHRISASKPRISSGISLSSSSSSNGFQKFPTFVSKPNGLSLFRNNGSLHICKAEAAAASEGQPLIGQEGEKK
KLLGVEVATLKKIIPLGLMFFCILFNYTILRDTKDVLVVTAQGSSAEIIPFLKTWVNLPMAIGFMLLYTKLSNVLSKQALFYTVILPFIAFFGAFGFVLY
PLSNHLHPHVFADKLLNVLGPRFLGPLAILRIWTFSLFYVMAELWGSVVVSVLFWGFANQITTVDEAKKFYPLFGLGANIALIFSGRTVKYFSNLRKNLG
PGVDGWAVSLKGMMSIVVLMGGAICFLYWWVNRSVALPTRSKKKKEKPKMGTMESLKFLISSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEY
SAFMGDFSTATGIATFTMMLVSQYIFDKYGWGAAAKITPTVLLLTGVGFFSLLLFGAPLTPTLMQFGMTPLLAAVYVGALQNIFSNRAKYSLFDPCKEMA
YIPLDEETKIKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGVTLLGIVIAWLAAARSLDGQFTALRREEELEKEMERAAAVKIPVVSDNDN
ENGNGSLRSGSGSPLNPTAGGSTSSSSGPSASKF

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G80300 ATNTT1 nucleotide transporter 1 (.1) Lus10035908
[exp]
0 1
AT4G18210 ATPUP10 purine permease 10 (.1) Lus10040118
[exp]
58.0 0.8686
AT5G36930 Disease resistance protein (TI... Lus10029921
[exp]
62.7 0.8784
AT5G12340 unknown protein Lus10009698
[exp]
108.0 0.8315
AT4G02460 PMS1 POSTMEIOTIC SEGREGATION 1, DNA... Lus10010284
[exp]
108.4 0.8422
AT2G37770 ChlAKR, AKR4C9 Chloroplastic aldo-keto reduct... Lus10024354
[exp]
109.5 0.8604
AT2G41480 Peroxidase superfamily protein... Lus10020422
[exp]
127.2 0.8540
AT5G64120 Peroxidase superfamily protein... Lus10007050
[exp]
147.5 0.8411
AT2G16430 ATPAP10, PAP10 purple acid phosphatase 10 (.1... Lus10017485
[exp]
164.2 0.8424
AT3G02990 HSF ATHSFA1E heat shock transcription facto... Lus10005925
[exp]
164.5 0.8201
AT3G62550 Adenine nucleotide alpha hydro... Lus10025033
[exp]
201.7 0.8244

Lus10035908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.