Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11420 424 / 1e-147 Protein of unknown function, DUF642 (.1) AT5G25460 413 / 2e-143 Protein of unknown function, DUF642 (.1) AT4G32460 411 / 8e-143 Protein of unknown function, DUF642 (.1.2) AT1G80240 398 / 1e-137 Protein of unknown function, DUF642 (.1) AT3G08030 334 / 1e-112 Protein of unknown function, DUF642 (.1.2) AT2G41810 329 / 2e-110 Protein of unknown function, DUF642 (.1) AT2G41800 325 / 5e-109 Protein of unknown function, DUF642 (.1) AT2G34510 326 / 9e-109 Protein of unknown function, DUF642 (.1) AT1G29980 322 / 2e-107 Protein of unknown function, DUF642 (.1.2) AT5G14150 148 / 1e-40 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025753 [exp] 656 / 0 AT5G11420 453 / 8e-160 Protein of unknown function, DUF642 (.1) Lus10005474 [exp] 420 / 5e-146 AT5G11420 581 / 0.0 Protein of unknown function, DUF642 (.1) Lus10013112 [exp] 417 / 6e-145 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 417 / 9e-145 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1) Lus10029501 [exp] 334 / 2e-112 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10039602 [exp] 331 / 3e-111 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10023314 [exp] 332 / 4e-111 AT2G34510 608 / 0.0 Protein of unknown function, DUF642 (.1) Lus10038495 [exp] 328 / 1e-108 AT2G34510 605 / 0.0 Protein of unknown function, DUF642 (.1) Lus10029502 [exp] 316 / 3e-105 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G059800 [exp] 461 / 4e-162 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 455 / 1e-159 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G250100 [exp] 416 / 2e-144 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 406 / 6e-140 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 340 / 9e-115 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 337 / 9e-114 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050300 [exp] 333 / 3e-112 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 330 / 1e-110 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.009G058800 [exp] 323 / 3e-108 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.001G263900 [exp] 322 / 1e-107 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF04862 [flax] [poplar] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Lus10035910 pacid=23141260 polypeptide=Lus10035910 locus=Lus10035910.g ID=Lus10035910.BGIv1.0 annot-version=v1.0 ATGGACACATCATCCGGCCGCCGGCGGTCTAATTTGTTGCTCTTGGTGCTACTTTGCGCCACCAGCCTCGTTTCCTCCTTCACCCACGATGGTCTGCTTG ACAACGGGGACTTCGAGCACGGTCCAGAAAGATCCGAAATGAAAGGAACTGTGGTAAAGGCCAAAAACGGCATCCCAAGCTGGGAAATTCAAGGGCTAGT TGAGTACATCAAGTCAGGTCAGAGGCAAGGAGACATGCTCCTCGTGGTCCCCAACGGAGCCTTCGCCGTCCGATTGGGAAACGACGGCTCCATCAAGACG GCACCGTTGACGGTCAAGAAAGGAAAGTTCTACTCCCTCACATTCAACGTGGCACGCACCTGCGCACAAGAGGAGAAGCTCAACGTCTCCGTCACCCCTA ACGGCGACTCAGGCATCCTCCCCATGCAGACAATGTACAGCAGCACCGGCTGGGACGCTTTCGCATGGGCCTTCAAGGCCCAATCCGACCGTGTTGTGGT CTCCTTCCACAACCCGGCCGAGGACAAGGAAGACCCCGCTTGTGGGCCCCTCCTCGATTCCGTGGCGCTGAAGCTTCTCACCAACGCCAAACGCCCCAAA GGGAACATGTTGAAGAACGGGGATTTCGAGGACGGACCTTACTTCATCCCTAACGTAACTTCAGGGGTGCTGATCCCGTCCCACATCGAGGACGACCATT CCCCGTTGATGGGCTGGATGATCGAATCGCTGAAAGCCGTCAAGTACGTTGACGGCTCCCACTTCTCCGTCCCGAGCGGGGAACGGGCGGTGGAGCTGCT GGCCGGGAGGGAGAGTGCGATCTCGCAGACTGTGCGGACCACCGTGGGGAAGACGTACGTGCTTACGTTCGCCGTGGGGGATGCTGGGGATCAGTGCGTG GGGCCGTTGGCAGTAGAGGCGTATGCGGGAGCGAGTAAAGTTGAGGTGACGTATACTTCTGTGGGGAAAGGTGGGTTCAAGAAGGGAGTGGTGCAGTTTA AGGCGTTGAAGGATCGTACGAGGATAACATTCATGAGCCCGTATTATACGATGAAGAATGATAAGACGGGGGTGCTTTGTGGGCCCGTATTGGATGACGT CAAGTTGTACAACAAGTCAGATGGTTTAGAGAGAGAGAGTGTGAGAGCGAGAGGGAGAGGAAGAGGAGGAGGCCCTGTTGGCCACGGGGCGGAGCTTTCC GGTTCAGATCGAGGTGGTGGACCTTGTCCCGCTGTCGCGTGGTGGTGA
AA sequence Show only first row Show all	>Lus10035910 pacid=23141260 polypeptide=Lus10035910 locus=Lus10035910.g ID=Lus10035910.BGIv1.0 annot-version=v1.0 MDTSSGRRRSNLLLLVLLCATSLVSSFTHDGLLDNGDFEHGPERSEMKGTVVKAKNGIPSWEIQGLVEYIKSGQRQGDMLLVVPNGAFAVRLGNDGSIKT APLTVKKGKFYSLTFNVARTCAQEEKLNVSVTPNGDSGILPMQTMYSSTGWDAFAWAFKAQSDRVVVSFHNPAEDKEDPACGPLLDSVALKLLTNAKRPK GNMLKNGDFEDGPYFIPNVTSGVLIPSHIEDDHSPLMGWMIESLKAVKYVDGSHFSVPSGERAVELLAGRESAISQTVRTTVGKTYVLTFAVGDAGDQCV GPLAVEAYAGASKVEVTYTSVGKGGFKKGVVQFKALKDRTRITFMSPYYTMKNDKTGVLCGPVLDDVKLYNKSDGLERESVRARGRGRGGGPVGHGAELS GSDRGGGPCPAVAWW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11420			Protein of unknown function, D...		Lus10035910 [exp]	0	1
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10004348 [exp]	1.7	0.9717
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Lus10028780 [exp]	2.0	0.9674
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028929 [exp]	2.0	0.9691
AT5G15140			Galactose mutarotase-like supe...		Lus10030673 [exp]	2.2	0.9669
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	3.5	0.9682
AT5G51520			Plant invertase/pectin methyle...		Lus10031712 [exp]	5.3	0.9549
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	5.7	0.9532
AT5G42320			Zn-dependent exopeptidases sup...		Lus10012267 [exp]	5.7	0.9104
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	6.0	0.9527
AT4G28720		YUC8	YUCCA 8, Flavin-binding monoox...		Lus10000494 [exp]	6.0	0.9457

Compare expression of checked genes

Lus10035910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.