Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15740 561 / 0 Leucine-rich repeat family protein (.1) AT5G27920 65 / 1e-10 F-box family protein (.1) AT5G23340 59 / 4e-09 RNI-like superfamily protein (.1) AT4G15475 58 / 2e-08 F-box/RNI-like superfamily protein (.1) AT3G58530 53 / 4e-07 RNI-like superfamily protein (.1) AT5G25350 52 / 1e-06 EBF2 EIN3-binding F box protein 2 (.1) AT2G25490 52 / 1e-06 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT4G33210 50 / 3e-06 SLOMO SLOW MOTION, F-box family protein (.1) AT5G01720 47 / 3e-05 RNI-like superfamily protein (.1) AT1G80570 47 / 3e-05 RNI-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025751 [exp] 991 / 0 AT1G15740 660 / 0.0 Leucine-rich repeat family protein (.1) Lus10008036 [exp] 514 / 3e-177 AT1G15740 675 / 0.0 Leucine-rich repeat family protein (.1) Lus10038107 [exp] 478 / 2e-163 AT1G15740 652 / 0.0 Leucine-rich repeat family protein (.1) Lus10029869 [exp] 69 / 6e-12 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10001264 [exp] 66 / 8e-11 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10012764 [exp] 63 / 6e-10 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002014 [exp] 62 / 8e-10 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10011626 [exp] 61 / 8e-10 AT5G27920 107 / 3e-25 F-box family protein (.1) Lus10012214 [exp] 62 / 1e-09 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G061700 [exp] 541 / 0 AT1G15740 612 / 0.0 Leucine-rich repeat family protein (.1) Potri.001G092000 [exp] 85 / 4e-17 AT4G23840 480 / 7e-164 Leucine-rich repeat (LRR) family protein (.1) Potri.006G105400 [exp] 67 / 2e-11 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.005G022600 [exp] 60 / 3e-09 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.016G128400 [exp] 58 / 2e-08 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 57 / 4e-08 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 56 / 5e-08 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G007900 [exp] 56 / 8e-08 AT1G74170 430 / 5e-132 receptor like protein 13 (.1) Potri.018G027700 [exp] 56 / 1e-07 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G195800 [exp] 52 / 6e-07 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035912 pacid=23141090 polypeptide=Lus10035912 locus=Lus10035912.g ID=Lus10035912.BGIv1.0 annot-version=v1.0 ATGGGTGGGTTTTGTTCAACCAAGAGAGGCTATCTAGAACATGAAGATTACAAAAATAGTCTACCGGGAAGGATTTGCAGAAAGTTCAGTAAGAATGGAA GCTCAAAGTGGTTGTTGTTTACTCCAGCAGCTTCCAAGCAGCTAGTAAATGATGTGAATATCGAATGCCCTTCCCTTTTGGACCTCTGCGTCCTAAATAT CTGTAATGATATACATAAACATAATAGCTTCACCATGCTCCCAAGGGACATCACTCAGCTGATCTTTAACCAACTGGTGTACTCTGTGCGTCTCACCGGT GCTTCTCTACAAGCATTCCACCACTGCGCCCTCCAGCCGGGGGATGTTAATGACTACTGGATGGAGACTATCTCGTCTCAGGGCATGTCATTGCTTTCCG TCGATATATCTGGGTCGGATGTGACTGATTCCGGGTTAGGTTGTCTCAAAGTCTGCAATAGCTTGCAAACCCTTAATTTTGACTACTGTGACAACATTTC TGACCTTGGGCTAAAGGAGATTGGAGAAGGCTGCTCAAACTTGACAAGTTTGAGCTTCCGACGAAACAATGCCATCACTGCGGAGGGATTGAGAGCAGTT GCCACATTGAAAAACCTAGTTCAATTGGACATGGATAGGTGTCCCGGCATTGGCGGTGGTGCTCTTGTTCATCTCAACGGCTTGTCAAAGTTGGAATCTC TTAACCTCAATTGGTGCAACTGCATCAAGGATGTTGATGTGAAGCACCTTTCTGGTCTTACTAGCTTGAAGAGCCTGCAAATGTCTTGCAGCAAGGTTAC AGATATGGGGATCGCTTATCTGAAAGATTTGCATAAGCTTACGCTTCTCAACTTGGAGGGTTGCCCAGTTACAGCCGCATGCTTGGAATTTCTATCAGGT CTAGCTTCTCTGTCATACCTGAACCTTAACAGGTGTCATCTATCTGATGCTGGATGTCATAAGTTTTCAAAATTTGGAAAACTGAAGATTCTTAATTTGG GCTTCAATGACATCACGGATGCATGTTTGGTACACCTCCAAGCAAACCTTATGCTTCTTTGTGGTGAAATGCTTCCATCTTTAACGAAAGGTTTAATGAC TTGCCTCCTCTGTGCTTGCGGGTCTTATTGTGAAGCAGGCTTAACAGATTTGGAGAGCTTGAACTTGGATTCATGCCAAATAACCGATGATGGGATGCTG AGCTTAAAAGGTCTGTGGAGCTTAAAATGCTTAGTGTTATCAGATACTGAAGTTGGAAGCAATGGGCTATGCCACCTTTCCGGTATGGTTAATCTGGAGA GCGTAAATCTGTCGTTCACCATGGTTACTGATGGTGGTTTAAGAATACTGTCTAGATTAACATCTATCAAATCTCTTAACCTGGACGCACGCCAAATTAC AGATACTGGACTTGCAGCCCTTACGAGTTTGACTGGATTGACCCATCTGGATCTCTTTGGAGCTCGTATTACTGATTCTGGGACATCCTACTTACGAAAT TTGAAGAAGCTACGCTCCTTAGAAATTTGTGGAGGAGGATTAACTGATGCTGGTGTGAAGAACATCAAAGAACTGTCTTCTCTGACTCTTCTTAATCTAT CACAGAACTGCAACCTAACAGACAGATCACTGGAGTTGATTTCAGGGCTGACTGGGTTAATTTCGTTGAATGTATCGAATTCTGGGATCACAGCTGCTGG TCTGCAGCATCTGAAGCCGCTGAAAAGCTTGAAGTCATTGAGCATGGAGTCGTGTAAGGTCACGGCTAGTGACATGAAGAAGCTTCAATCGTTTGACCTC CCAAACCTCGTGACATTCCGACCTGAAGAGTAA
AA sequence Show only first row Show all	>Lus10035912 pacid=23141090 polypeptide=Lus10035912 locus=Lus10035912.g ID=Lus10035912.BGIv1.0 annot-version=v1.0 MGGFCSTKRGYLEHEDYKNSLPGRICRKFSKNGSSKWLLFTPAASKQLVNDVNIECPSLLDLCVLNICNDIHKHNSFTMLPRDITQLIFNQLVYSVRLTG ASLQAFHHCALQPGDVNDYWMETISSQGMSLLSVDISGSDVTDSGLGCLKVCNSLQTLNFDYCDNISDLGLKEIGEGCSNLTSLSFRRNNAITAEGLRAV ATLKNLVQLDMDRCPGIGGGALVHLNGLSKLESLNLNWCNCIKDVDVKHLSGLTSLKSLQMSCSKVTDMGIAYLKDLHKLTLLNLEGCPVTAACLEFLSG LASLSYLNLNRCHLSDAGCHKFSKFGKLKILNLGFNDITDACLVHLQANLMLLCGEMLPSLTKGLMTCLLCACGSYCEAGLTDLESLNLDSCQITDDGML SLKGLWSLKCLVLSDTEVGSNGLCHLSGMVNLESVNLSFTMVTDGGLRILSRLTSIKSLNLDARQITDTGLAALTSLTGLTHLDLFGARITDSGTSYLRN LKKLRSLEICGGGLTDAGVKNIKELSSLTLLNLSQNCNLTDRSLELISGLTGLISLNVSNSGITAAGLQHLKPLKSLKSLSMESCKVTASDMKKLQSFDL PNLVTFRPEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15740			Leucine-rich repeat family pro...		Lus10035912 [exp]	0	1
AT1G28540			unknown protein		Lus10042196 [exp]	2.0	0.8668
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10024729 [exp]	2.2	0.8892
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10003690 [exp]	2.8	0.8839
AT2G38780			unknown protein		Lus10019776 [exp]	6.7	0.8730
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10043039 [exp]	7.3	0.8351
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10008619 [exp]	9.2	0.8321
AT2G24395			chaperone protein dnaJ-related...		Lus10020173 [exp]	10.2	0.8405
AT2G27310			F-box family protein (.1)		Lus10003731 [exp]	11.5	0.8127
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10007994 [exp]	16.5	0.8170
AT5G14120			Major facilitator superfamily ...		Lus10023961 [exp]	19.7	0.8090

Compare expression of checked genes

Lus10035912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.