Plant FIBer expression Database

Lus10035914 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G80460 829 / 0 GLI1, NHO1 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2)
AT4G30310 44 / 0.0002 FGGY family of carbohydrate kinase (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025750
[exp]
895 / 0 AT1G80460 760 / 0.0 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2)
Lus10006975
[exp]
68 / 8e-12 AT4G30310 927 / 0.0 FGGY family of carbohydrate kinase (.1.2.3)
Lus10001312
[exp]
56 / 5e-08 AT4G30310 758 / 0.0 FGGY family of carbohydrate kinase (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G030900
[exp]
853 / 0 AT1G80460 833 / 0.0 nonhost resistance to P. s. phaseolicola 1, Actin-like ATPase superfamily protein (.1.2)
Potri.018G095700
[exp]
51 / 1e-06 AT4G30310 989 / 0.0 FGGY family of carbohydrate kinase (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0108 Actin_ATPase PF00370 FGGY_N FGGY family of carbohydrate kinases, N-terminal domain
CL0108 Actin_ATPase PF02782 FGGY_C FGGY family of carbohydrate kinases, C-terminal domain
Representative CDS sequence
>Lus10035914 pacid=23141164 polypeptide=Lus10035914 locus=Lus10035914.g ID=Lus10035914.BGIv1.0 annot-version=v1.0
ATGGCAGCAGCTTTCATTGGTGCGATCGATCAAGGCACAACCAGCACTAGATTCATCATCTACGATCAAAACAAGAAATGCATCGGATCTCACCAGGTCG
AGTTCACTCAGTTCTACCCTGAGGCCGGATGGGTGGAACACAATCCGATGGAGATACTGGAAACCGTGAAGATTTGTATGGCTAAGGCCGTGGACAAGGC
CACTGCGGATGGCCATAACGTTGACGGTTGCTTGAAGGCCATTGGGTTGACCAATCAGAGAGAGACTACCCTTCTTTGGAGCAAATCCACTGGCCTTCCT
CTCCATAACGCCATTGTTTGGATGGACGTACGCACAAGCTCAATTTGCAGGAAATTGGAGGAGCAATTATCAGGAGGAAGGACCCACTTCGTTGACACAT
GTGGGCTGCCTATTAGCACATACTTCAGTGCACTCAAGATCCTTTGGCTGTTCGAAAACGTTGGTGCTGTCAAGGGAGCTGTTAAATCTGGTGATGCTCT
CTTTGGAACTATAGACACTTGGTTGATCTGGAATTTAACCGGCGGTATCCATGGTGGATTGCACGTTACCGATGTCTCCAACGCCTCGAGGACTATGCTC
ATGAACCTCAAGACTCTTGATTGGGACAAACCCACTCTGGAAACTCTCAAAATCCCAGCTTCCATCCTGCCCAAGATTGTCAGCAACTCTGAGGTAATTG
GGAAAATTGCAAAAGGATGGCCTGTTACTGGTATACCCATTGCTGGTTGTTTGGGGGATCAACATGCTGCAATGGTTGGACAAGCTTGTAGGAAAGGTGA
GGCCAAAAGCACCTATGGAACTGGTGCCTTCATACTGCTAAACACAGGAGAGGAGGTTGTTAAGTCCAACCATGGACTACTAACCACTTTGGCTTACAAA
CTTGGTCCCAAGGCACCTACGAACTATGCTCTAGAGGGTTCAATTGCTATAGCAGGAGCTGCGGTGCAGTGGCTGAGAGACGGTCTTCGTATGATCAAGA
GCGCAGCTGAGATTGAGGAATTGGCGCTGAAGGTGGACACAACGGGTGGTCTTTACTTTGTCCCTGCTTTCAACGGCCTATTTGCTCCGTGGTGGCGAGA
TGATGCTCGTGGTATTTTCATTGGGATCACAAGGTTCACTAATGACTCCCACGTAGCTAGAGCTGTGCTGGAAAGCATGTGTTTCCAAGTGAAGGACGTG
CTGGATTCCATGCACAAAGATGCGGCTAAGAAGGATGGTGCACAAAAGGGAGAGTTCTTGCTGAGAGTGGATGGTGGCGCTACTGCCAACAGCCTTCTAA
TGCAGATTCAGGCAGACTTGCTAGGGAGCCCAGTGGTGAGGCCGGCTGACATTGAAACAACAGCACTGGGAGCAGCCTATGCAGCTGGTTTGGCGATTGG
AGTGTGGAACGAAAGAGAGATATTTGCATCGGGGGATACGAGCAGAACAGACAAAACCTTTAGGCCGATACTTGAGGAGAGCGTGAGGAAGAAGAAGTTG
GCGTCTTGGGGAAAAGCTGTGGAGAGAACTTTCGACTTGGCCGATCTTTATTAG
AA sequence
>Lus10035914 pacid=23141164 polypeptide=Lus10035914 locus=Lus10035914.g ID=Lus10035914.BGIv1.0 annot-version=v1.0
MAAAFIGAIDQGTTSTRFIIYDQNKKCIGSHQVEFTQFYPEAGWVEHNPMEILETVKICMAKAVDKATADGHNVDGCLKAIGLTNQRETTLLWSKSTGLP
LHNAIVWMDVRTSSICRKLEEQLSGGRTHFVDTCGLPISTYFSALKILWLFENVGAVKGAVKSGDALFGTIDTWLIWNLTGGIHGGLHVTDVSNASRTML
MNLKTLDWDKPTLETLKIPASILPKIVSNSEVIGKIAKGWPVTGIPIAGCLGDQHAAMVGQACRKGEAKSTYGTGAFILLNTGEEVVKSNHGLLTTLAYK
LGPKAPTNYALEGSIAIAGAAVQWLRDGLRMIKSAAEIEELALKVDTTGGLYFVPAFNGLFAPWWRDDARGIFIGITRFTNDSHVARAVLESMCFQVKDV
LDSMHKDAAKKDGAQKGEFLLRVDGGATANSLLMQIQADLLGSPVVRPADIETTALGAAYAAGLAIGVWNEREIFASGDTSRTDKTFRPILEESVRKKKL
ASWGKAVERTFDLADLY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G80460 GLI1, NHO1 nonhost resistance to P. s. ph... Lus10035914
[exp]
0 1
Lus10000300
[exp]
8.9 0.9023
AT3G13960 GRF ATGRF5 growth-regulating factor 5 (.1... Lus10015651
[exp]
9.4 0.8372
AT2G19330 PIRL6 plant intracellular ras group-... Lus10003229
[exp]
10.8 0.8727
AT3G53630 unknown protein Lus10025312
[exp]
11.2 0.9019
AT1G80460 GLI1, NHO1 nonhost resistance to P. s. ph... Lus10025750
[exp]
12.1 0.9215
AT5G25900 ATKO1, CYP701A3... CYTOCHROME P450 701 A3, ARABID... Lus10042641
[exp]
14.8 0.8416
AT5G36930 Disease resistance protein (TI... Lus10001039
[exp]
15.9 0.8379
AT1G21400 Thiamin diphosphate-binding fo... Lus10018945
[exp]
20.3 0.8926
AT1G59960 NAD(P)-linked oxidoreductase s... Lus10011056
[exp]
22.9 0.8950
AT1G65910 NAC ANAC028 NAC domain containing protein ... Lus10015554
[exp]
29.5 0.8373

Lus10035914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.