Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15820 321 / 2e-110 ROD1 REDUCED OLEATE DESATURATION 1, phosphatidic acid phosphatase-related / PAP2-related (.1) AT3G15830 300 / 5e-102 phosphatidic acid phosphatase-related / PAP2-related (.1) AT2G29525 42 / 0.0004 AtIPCS3 Arabidopsis Inositol phosphorylceramide synthase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025747 [exp] 459 / 2e-165 AT3G15820 325 / 3e-112 REDUCED OLEATE DESATURATION 1, phosphatidic acid phosphatase-related / PAP2-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032200 [exp] 329 / 9e-114 AT3G15820 337 / 1e-116 REDUCED OLEATE DESATURATION 1, phosphatidic acid phosphatase-related / PAP2-related (.1) Potri.001G204100 [exp] 310 / 3e-106 AT3G15820 334 / 1e-115 REDUCED OLEATE DESATURATION 1, phosphatidic acid phosphatase-related / PAP2-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035915 pacid=23141073 polypeptide=Lus10035915 locus=Lus10035915.g ID=Lus10035915.BGIv1.0 annot-version=v1.0 ATGAATGCCGCACCCACCACCACCGTGGCAGCCACCGCCATTCCGTTGAAGCGCAAGAAAACGGATATTGCTGCTAAAACTCAGAAAAACAGCAATGGAA ATGTGGACAAATACCCAGCAGAGGAGGAGGAGGAGGCAGTAGTGGAGAGCGCGGCGCCGGCGTTTACGAAATGGAGGAGGAGAGATGCGATGAATGCGGT TAGGGAGCATTGGTTGCCTGTCATATTGGGAGGTGCCCTGTTGTTTTTCATGTGGGTTGAGTACACCCTCAGGATGGTCCCGACCTCCTCACAACCCTTT GATTTAGGGTTCGTGGCCACCCGAGCTCTCCATCGCCTTCTTTCTTCGTCGCCGGAGCTCAACTCCGTCCTCGCCGCTCTCAACACGGTGTTCGTGGGAA TGCAGACAAGCTACATATTGTGGACGTTTGTGGTGGAGGGAAGGGGGAGACCCACTATCTCTGCACTTTTCATGTTCACTTGCCGTGGAATTCTTGGCTA TTCCACTCAGCTTCCTCTCCCCGAGGGATATTTGGGGTCGGGAGTGGACTTCCCAGTAGGGAACGTGTCGTTTTTCCTGTTCTTCTCCGGGCACGTGGCG GGATCAGTAATAGCATCACAGGATATGAGGAGAATGCAAAGGTGGGAGCTTGCCTTGGGATTTGAATTCCTCAACGCCTTACAAGTGGTCAGGCTACTCG CCACCAGAGGTCACTACACCATTGATTTGGCCGCTGGTTATGCCGCCGGTCTACTCTTTGACTCACTTGCCGGACGTTACCTCCAAACCAAGACCACCAC TGCTGCTGCTCTTCTTACCACTTCTCCCAGAAAATTTGTCACCAACTAG
AA sequence Show only first row Show all	>Lus10035915 pacid=23141073 polypeptide=Lus10035915 locus=Lus10035915.g ID=Lus10035915.BGIv1.0 annot-version=v1.0 MNAAPTTTVAATAIPLKRKKTDIAAKTQKNSNGNVDKYPAEEEEEAVVESAAPAFTKWRRRDAMNAVREHWLPVILGGALLFFMWVEYTLRMVPTSSQPF DLGFVATRALHRLLSSSPELNSVLAALNTVFVGMQTSYILWTFVVEGRGRPTISALFMFTCRGILGYSTQLPLPEGYLGSGVDFPVGNVSFFLFFSGHVA GSVIASQDMRRMQRWELALGFEFLNALQVVRLLATRGHYTIDLAAGYAAGLLFDSLAGRYLQTKTTTAAALLTTSPRKFVTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10035915 [exp]	0	1
AT5G25590			Protein of unknown function (D...		Lus10037901 [exp]	1.4	0.9496
AT1G31335			unknown protein		Lus10038328 [exp]	2.0	0.9419
AT3G07800			Thymidine kinase (.1)		Lus10012347 [exp]	2.4	0.9450
AT3G51290			Protein of unknown function (D...		Lus10041884 [exp]	3.5	0.9430
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10023754 [exp]	4.9	0.9266
AT2G25270			unknown protein		Lus10001929 [exp]	5.5	0.9333
AT4G03100			Rho GTPase activating protein ...		Lus10024768 [exp]	9.2	0.9316
AT5G03870			Glutaredoxin family protein (....		Lus10021353 [exp]	10.0	0.9350
AT1G71760			unknown protein		Lus10030260 [exp]	10.6	0.9300
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10016676 [exp]	11.8	0.9055

Compare expression of checked genes

Lus10035915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.