Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15320 177 / 7e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025746 [exp] 526 / 0 AT1G15320 196 / 2e-61 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G202300 [exp] 235 / 1e-76 AT1G15320 203 / 3e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035916 pacid=23141047 polypeptide=Lus10035916 locus=Lus10035916.g ID=Lus10035916.BGIv1.0 annot-version=v1.0 ATGAACAAGTCACCGCCGCAATTCCTCTGGAATGCCTATGACGAGAATGACTGTGGGAGACGGAAAGGAGAAAGACGATTGAGAACGAAAGGCACAAAGA GAGATGTTGATGATCGTGATGGAACCCAAGTTGTGCAATGCATGATAACCTTTAACAAGCAAGACAACACACATCACAAAGAAGGGTACTGGGGGAAGTA TGGCCTTAGGAGACAGGAGCAGAAAACTAGAGCAGCAGGGCTTCAGAAACAGCTAAAGGCAAGATGGGAGTCTGAAGAGCTGATCGAGGATCAGTTGAAT TGGTTTCATGCTCACTACCGCCGCACCATTATCCCCACAAAGCTGAATGATGTTTCTCAGCTTCTGGTGCCTAGATCTGCACCCCCACATGAGCTAGCCA CAATGGCATGGCTTGGAGATTGGCGTCCCTCTGCGATTCTGGAACTCCTACATTGTTTGTCGAACCCAGCTTCAGGTGAAACTAACCTGTCACAGCTCAT CCACGAAATCCAGATCGAAGAGTCGGTGATTGATGAGGAAATGGCTGAGGTTCAGGCCAAATGTGTCCTTCATCTACCCTTTGGTCCTCCATATAGGCAA GAAGAATCAGGGGACGCTGAGCTGAGCTGCATTGAGGCTGAGTTCAGGAAGATTCAGAGTGCCATAGCTAAGGCTCAAGAGCTAAGGTTCAAGACGTTGG AACTACTTGTTAAGAAGGTACTGGGGAAAACTAAGGCAGCAGAGTTCTTTGTGGTGTTTGTGAAAGTGCAAGAAGTGATCCACAATCATGCAGCAAGGCG CAAGTTACCAAAGGGTCCATGGACGATCCCGGTGAAGCACCTACCCATTAAGGGTTCCTTCTGA
AA sequence Show only first row Show all	>Lus10035916 pacid=23141047 polypeptide=Lus10035916 locus=Lus10035916.g ID=Lus10035916.BGIv1.0 annot-version=v1.0 MNKSPPQFLWNAYDENDCGRRKGERRLRTKGTKRDVDDRDGTQVVQCMITFNKQDNTHHKEGYWGKYGLRRQEQKTRAAGLQKQLKARWESEELIEDQLN WFHAHYRRTIIPTKLNDVSQLLVPRSAPPHELATMAWLGDWRPSAILELLHCLSNPASGETNLSQLIHEIQIEESVIDEEMAEVQAKCVLHLPFGPPYRQ EESGDAELSCIEAEFRKIQSAIAKAQELRFKTLELLVKKVLGKTKAAEFFVVFVKVQEVIHNHAARRKLPKGPWTIPVKHLPIKGSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15320			unknown protein		Lus10035916 [exp]	0	1
AT3G20260			Protein of unknown function (D...		Lus10034809 [exp]	2.4	0.9269
AT3G48970			Heavy metal transport/detoxifi...		Lus10039225 [exp]	4.9	0.9134
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10018753 [exp]	7.5	0.9216
AT3G53730			Histone superfamily protein (....		Lus10023331 [exp]	8.5	0.9152
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10038092 [exp]	9.7	0.9112
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10013544 [exp]	16.7	0.9082
AT1G17140		RIP1, ICR1	ROP INTERACTIVE PARTNER 1, int...		Lus10013708 [exp]	17.9	0.8934
AT1G66740		AtSP7, SGA2, AS...	ANTI- SILENCING FUNCTION 1A, A...		Lus10017622 [exp]	18.3	0.8791
AT5G62710			Leucine-rich repeat protein ki...		Lus10033104 [exp]	19.0	0.9083
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10030378 [exp]	19.9	0.8996

Compare expression of checked genes

Lus10035916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.