Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80230 171 / 8e-55 Rubredoxin-like superfamily protein (.1) AT3G15640 149 / 3e-46 Rubredoxin-like superfamily protein (.1.2) AT1G52710 103 / 2e-29 Rubredoxin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025745 [exp] 194 / 2e-64 AT1G80230 161 / 3e-51 Rubredoxin-like superfamily protein (.1) Lus10011494 [exp] 179 / 6e-59 AT1G80230 148 / 5e-47 Rubredoxin-like superfamily protein (.1) Lus10023135 [exp] 116 / 5e-34 AT1G80230 90 / 9e-24 Rubredoxin-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G173800 [exp] 173 / 7e-56 AT1G80230 162 / 2e-51 Rubredoxin-like superfamily protein (.1) Potri.003G060100 [exp] 167 / 1e-53 AT1G80230 167 / 2e-53 Rubredoxin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0045 [flax] [poplar] Rubredoxin PF01215 [flax] [poplar] COX5B Cytochrome c oxidase subunit Vb
Representative CDS sequence Show only first row Show all	>Lus10035917 pacid=23141214 polypeptide=Lus10035917 locus=Lus10035917.g ID=Lus10035917.BGIv1.0 annot-version=v1.0 ATGTGGAGAAGAACAGTTTGTTCTCATCTCAAAACCCTAGCAGCCACCGGCGCAGCCTCCTCATCTTTGCCCTCCCGATTGCCTAGCGCCAACAGATCCT TAATCTCCCCGGGAGTCTCTTCTTCTCTATTCAACCGCTATTTCAGTGCCGGCGAAGATGGTGCATTGAAAAAGAGTGTTGAGGATGTGGTGCCTATTGC CACTGGCCATGAACGTGAAGAACTGGAAGCTGAATTGCAGGGAAAGAACCTTCTCGACATTAACTTTCCTGTCAGTCCATTTGGCACAAAGGAGGAACCT GCTGTCATCAAGTCTTACTATGACAGGAGGATCGTTGGATGCCCTGGTGGTGAAGAAGAGGATGAGCATGATGTTGTGTGGTTTTGGTTGGAGAAAGGCC AGCATGTTGAATGCACTGTATGCTCACACTACTTTGTTCTCGAAGTTGTTGGCCCTGGAGGAGACCCTGAGGCTGGACATGGTGATGAGCATCATCACTA A
AA sequence Show only first row Show all	>Lus10035917 pacid=23141214 polypeptide=Lus10035917 locus=Lus10035917.g ID=Lus10035917.BGIv1.0 annot-version=v1.0 MWRRTVCSHLKTLAATGAASSSLPSRLPSANRSLISPGVSSSLFNRYFSAGEDGALKKSVEDVVPIATGHEREELEAELQGKNLLDINFPVSPFGTKEEP AVIKSYYDRRIVGCPGGEEEDEHDVVWFWLEKGQHVECTVCSHYFVLEVVGPGGDPEAGHGDEHHH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80230			Rubredoxin-like superfamily pr...		Lus10035917 [exp]	0	1
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10040927 [exp]	1.7	0.8261
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10026155 [exp]	2.6	0.7421
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10011765 [exp]	3.5	0.8128
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10028317 [exp]	3.9	0.7703
AT5G65000			Nucleotide-sugar transporter f...		Lus10026182 [exp]	11.4	0.7378
AT3G10300			Calcium-binding EF-hand family...		Lus10042037 [exp]	12.3	0.7614
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10023471 [exp]	12.8	0.7549
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10032004 [exp]	14.5	0.6956
AT1G12390			Cornichon family protein (.1)		Lus10028906 [exp]	18.3	0.7424
AT5G49210			unknown protein		Lus10043148 [exp]	19.7	0.6799

Compare expression of checked genes

Lus10035917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.