Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37820 207 / 1e-65 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT4G18910 200 / 7e-63 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT5G37810 199 / 1e-62 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT4G19030 193 / 4e-60 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT2G34390 182 / 6e-56 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT1G31885 178 / 7e-54 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT1G80760 174 / 2e-52 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT4G10380 168 / 2e-50 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT3G06100 126 / 2e-34 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) AT5G47450 97 / 2e-23 ATTIP2;3, DELTA-TIP3 DELTA-TONOPLAST INTRINSIC PROTEIN 3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, tonoplast intrinsic protein 2;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025744 [exp] 555 / 0 AT5G37820 207 / 6e-66 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10020929 [exp] 223 / 1e-71 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) Lus10029274 [exp] 198 / 3e-62 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10035999 [exp] 185 / 2e-57 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10024066 [exp] 178 / 4e-54 AT1G80760 416 / 2e-147 NOD26-like intrinsic protein 6;1 (.1) Lus10010153 [exp] 166 / 2e-49 AT4G10380 450 / 6e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10017358 [exp] 166 / 2e-49 AT4G10380 446 / 2e-159 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10033268 [exp] 163 / 3e-48 AT4G10380 449 / 1e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10007322 [exp] 157 / 1e-47 AT4G18910 276 / 2e-94 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G097000 [exp] 241 / 7e-79 AT4G18910 229 / 3e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.011G072100 [exp] 209 / 2e-66 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.004G063000 [exp] 206 / 2e-65 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.010G112900 [exp] 200 / 4e-63 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.017G128200 [exp] 189 / 1e-58 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Potri.017G083300 [exp] 180 / 2e-55 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.001G046800 [exp] 177 / 1e-53 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.003G180900 [exp] 172 / 4e-52 AT1G80760 370 / 2e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.001G455000 [exp] 166 / 1e-49 AT4G10380 447 / 7e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.011G146900 [exp] 166 / 2e-49 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10035918 pacid=23141088 polypeptide=Lus10035918 locus=Lus10035918.g ID=Lus10035918.BGIv1.0 annot-version=v1.0 ATGGGTCATAATCGTCATCAGATTCCTCTGTCAAGTGGGGAATGCTCACCAAAAGCATCAATCGCGACTGAACCACAATCCTTCATCGAAGAAGGAAGAA AGGCAAGTATGAATAATATAGCTGTTATTTCACAGGTTACATCATCCACGGTAGACGATATTAGCTCTGCTTCTACAATCCATGCACATAAGATAATTGC AGAGCTGGTTGGGAGCTATGTGATAATACTAATAGGGTGTGCTTCAATAACGATGAAGAGGAAAGGGGAGATATCAATGGTGGGAGTGGGTGCAGCTTGG GGACTGGCATTGATGGTCATGATCTATACTATGGGTCACATCTCTGGCGCCCATTTCAACCCTGCCGTAACCATAGCTCTTGCTTCCTCCTGCCGCTTCT CATGGAAACAGGTACCAGGATATGTGGGAGCTCAGGTGGGAGGGTCAGTACTGGCGGTGTTAAGTCTGAAGGTGTTGTTCAATCATGAAAATGTGGATAT AAAAGAAATGACAAGCACTAGGATTCAGGGATCGTTAACATGTCTACAAGGCTTGTTATGGGAGTTGCTTATTTCATTCATTCTAATGCTCACCATTTGT GGCGTCGCCGTTGACACCAGAGCGGTCAACGAGCTGTCTGGGATCAGCATTGGAGCTGCGGTCCTTTTCAATGTAATGATAGCCGGGAATATGACGGGAG CATCGATGAACCCAGCGAGAAGCATAGGGGGAGCAATTGTGAACAGAGAATTTGAGAATATATGGATATACGTGGTTGGTCCAGTGGTTGGTATGCTAAC AGCTACAGCCATTTACAATGTTCTATTGACTCAGGGCGAGCACAAAAAGGATGGTACCAACGCTGAAGAGCGCGTGTGA
AA sequence Show only first row Show all	>Lus10035918 pacid=23141088 polypeptide=Lus10035918 locus=Lus10035918.g ID=Lus10035918.BGIv1.0 annot-version=v1.0 MGHNRHQIPLSSGECSPKASIATEPQSFIEEGRKASMNNIAVISQVTSSTVDDISSASTIHAHKIIAELVGSYVIILIGCASITMKRKGEISMVGVGAAW GLALMVMIYTMGHISGAHFNPAVTIALASSCRFSWKQVPGYVGAQVGGSVLAVLSLKVLFNHENVDIKEMTSTRIQGSLTCLQGLLWELLISFILMLTIC GVAVDTRAVNELSGISIGAAVLFNVMIAGNMTGASMNPARSIGGAIVNREFENIWIYVVGPVVGMLTATAIYNVLLTQGEHKKDGTNAEERV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37820		NIP4;2, NLM5	NODULIN- 26-LIKE MAJOR INTRINS...		Lus10035918 [exp]	0	1
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	9.1	0.8826
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	14.2	0.8781
					Lus10015828 [exp]	17.7	0.8751
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	20.5	0.8750
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10025620 [exp]	20.8	0.8669
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002933 [exp]	21.3	0.8724
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	24.9	0.8710
AT3G02750			Protein phosphatase 2C family ...		Lus10022683 [exp]	26.0	0.8651
AT4G38830		CRK26	cysteine-rich RLK (RECEPTOR-li...		Lus10002371 [exp]	28.8	0.8504
AT3G47090			Leucine-rich repeat protein ki...		Lus10034078 [exp]	29.5	0.8139

Compare expression of checked genes

Lus10035918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.