Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16840 218 / 1e-70 BPA1 binding partner of acd11 1 (.1.2.3) AT4G17720 216 / 2e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G46870 209 / 1e-66 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G32450 158 / 2e-47 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G67950 143 / 5e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G14340 99 / 1e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G01210 74 / 3e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025743 [exp] 343 / 2e-119 AT4G17720 295 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10040095 [exp] 213 / 3e-68 AT4G17720 379 / 8e-133 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030952 [exp] 212 / 9e-68 AT4G17720 382 / 7e-134 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011063 [exp] 200 / 7e-63 AT4G17720 333 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10000676 [exp] 192 / 8e-60 AT4G17720 313 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10010660 [exp] 136 / 6e-38 AT5G32450 352 / 3e-122 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013651 [exp] 138 / 7e-38 AT5G32450 343 / 5e-117 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012843 [exp] 102 / 9e-26 AT1G14340 301 / 5e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030491 [exp] 101 / 1e-25 AT1G14340 300 / 1e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G138400 [exp] 226 / 2e-73 AT4G17720 365 / 2e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G095400 [exp] 205 / 3e-65 AT4G17720 355 / 9e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G103600 [exp] 171 / 7e-52 AT1G67950 280 / 6e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.013G055100 [exp] 138 / 2e-39 AT5G32450 389 / 9e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.019G037600 [exp] 133 / 1e-37 AT5G32450 400 / 2e-142 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081500 [exp] 95 / 3e-23 AT1G14340 239 / 6e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081400 [exp] 91 / 9e-22 AT1G14340 229 / 3e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035919 pacid=23140987 polypeptide=Lus10035919 locus=Lus10035919.g ID=Lus10035919.BGIv1.0 annot-version=v1.0 ATGGAAAATTTTCTTATGAATGCCTTGATTTTGATGATGAGTCCTGAAGTGTTCCTGGGATTTGAACAAGTGAGATGCTGTATTCGCCAATTGGAATTTT GTATTTCTCTCCTTGGTTTGGATGATGAAGCTTCAGTCGATTCATGGTTCTGTAGTATTGCTAGATTTGGATATATTACTGCAGTCTTACCACCATATCT TCTTCTCCAGGGAGCCACAATAGTGGATCAGTCAGTTACAATAGAATTGGCTCCAGATTACGAGTTTCCGGCAGCTGCTCAAGTCTCTTCTAATACAACG GAGAACAACGGAGGTGCTAGAGCTGAATCAGCTATCCAAAAGGCCGAAGATGTAGTCAGTGGCATGCTGGCCAAGGGATTCTGCCTGGGGAAGGATGCAC TCAAGAGAGCCAAGACCTTCGATGAGAAGCTCCAACTGACGTCAACAGCGTCGTCCAAGGTTGCTTCTCTGGATCAAAAGATTGGTTTGACTGAGAAAAT CAGTGCAGGGACAAGCGTTGTGAATGAAAAAGTAAGAGAGATGGATGAGAAGTTGAAGGTGTCAGAGGCAGCCAAGGCCGCATTAACAGCTGCTGAACAG TCAGTCAGCACTGCAGGGTCAGCGATCATGAAGAACCATTATGTACTGACAGGGGCTTCGTGGGTTACTGGTGCATTTGGTCGGGTGAGCAAGGTAGCAG GTGAGGTGGGGCAGAAGACAAAGGAGAAGGTTTTGGCTGAGGAACAAGGAGCCAATAAGGCTGTACGCTACGTTCCAATTCATGATTCGTGA
AA sequence Show only first row Show all	>Lus10035919 pacid=23140987 polypeptide=Lus10035919 locus=Lus10035919.g ID=Lus10035919.BGIv1.0 annot-version=v1.0 MENFLMNALILMMSPEVFLGFEQVRCCIRQLEFCISLLGLDDEASVDSWFCSIARFGYITAVLPPYLLLQGATIVDQSVTIELAPDYEFPAAAQVSSNTT ENNGGARAESAIQKAEDVVSGMLAKGFCLGKDALKRAKTFDEKLQLTSTASSKVASLDQKIGLTEKISAGTSVVNEKVREMDEKLKVSEAAKAALTAAEQ SVSTAGSAIMKNHYVLTGASWVTGAFGRVSKVAGEVGQKTKEKVLAEEQGANKAVRYVPIHDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10035919 [exp]	0	1
AT3G16650			Transducin/WD40 repeat-like su...		Lus10001473 [exp]	7.3	0.6117
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10029726 [exp]	13.6	0.5777
AT2G18465			Chaperone DnaJ-domain superfam...		Lus10033506 [exp]	23.7	0.5532
AT1G50920			Nucleolar GTP-binding protein ...		Lus10007958 [exp]	27.9	0.5534
AT2G34050			unknown protein		Lus10007055 [exp]	40.6	0.4994
AT3G30280			HXXXD-type acyl-transferase fa...		Lus10029647 [exp]	46.0	0.5609
AT1G18530			EF hand calcium-binding protei...		Lus10038953 [exp]	47.6	0.5189
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10006821 [exp]	64.1	0.5239
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10036008 [exp]	68.6	0.4633
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10023810 [exp]	75.4	0.5163

Compare expression of checked genes

Lus10035919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.