Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22360 619 / 0 DNAJ heat shock family protein (.1) AT4G39960 605 / 0 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 350 / 1e-116 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G17830 291 / 3e-93 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G48030 211 / 2e-63 GFA2 gametophytic factor 2 (.1) AT1G28210 166 / 6e-47 ATJ1 DNAJ heat shock family protein (.1.2) AT5G22060 129 / 5e-33 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G44110 123 / 7e-31 ATJ3 DNAJ homologue 3 (.1.2) AT3G62600 104 / 8e-25 ATERDJ3B DNAJ heat shock family protein (.1) AT5G25530 69 / 2e-12 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000631 [exp] 706 / 0 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10023148 [exp] 702 / 0 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10025742 [exp] 623 / 0 AT2G22360 504 / 4e-179 DNAJ heat shock family protein (.1) Lus10023122 [exp] 358 / 1e-119 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10011484 [exp] 357 / 2e-119 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10031908 [exp] 254 / 4e-79 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10031336 [exp] 253 / 9e-79 AT3G17830 459 / 5e-158 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10027634 [exp] 206 / 2e-61 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10011934 [exp] 202 / 7e-60 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G094900 [exp] 691 / 0 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.005G073900 [exp] 681 / 0 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 349 / 4e-116 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.015G035300 [exp] 276 / 3e-87 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.001G271300 [exp] 218 / 5e-66 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.009G065500 [exp] 216 / 3e-65 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.005G160200 [exp] 175 / 2e-49 AT1G28210 478 / 3e-167 DNAJ heat shock family protein (.1.2) Potri.009G015700 [exp] 139 / 1e-36 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 132 / 4e-34 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 127 / 4e-32 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00684 [flax] [poplar] DnaJ_CXXCXGXG DnaJ central domain CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035920 pacid=23141266 polypeptide=Lus10035920 locus=Lus10035920.g ID=Lus10035920.BGIv1.0 annot-version=v1.0 ATGGCTGTTAGTCCCTGTGGAAGTACATCCCTTGCTCAATGGGGTACGCATCCTCAAGTTATTCCGAGGTCATACATGACAAACAGAATTGTCAGCTGCC AATATAGCCTTCGCAACAAGGACAGATGTTTGGCAGCTCCAAGTTCAATATTTGCGCAGGATTCCTTGCCTACGATATCATTTATGGGACATTCCAACGC TTTGCATCGCAGAAGGGGGGCACGATTTATAGTTAGAGCTGATGCTGACTACTACTCGGTACTTGGAGTGTCTAAAGATTCAGCTAAATCTGAGATCAAA AGTGCTTATCGGAAGCTTGCAAGGAACTATCATCCGGATGTGAACAATTCGATATGGACTACCACTGGTTATGGAACTAAGTGTCAAGTTGTACCGCAGG TCTTGTCCGATGATGAGAAGCGATCATTATATGACAGATACGGGGAGGCTGGTGTTAAAGGTGCTGGCATGGGATCATCGGATTTCAGCAACCCTTTCGA TTTGTTCGAGTCTTTGTTTGACATGGGAAACATAAACATGGGTGGGATGGGAGGCAGGGCTTCAAGGAACGCAGGGGTTGATGGCCAGGATGAATATTAC AATCTGGTTCTAACTTTTAACGAAGCGATATTTGGAGTTGAAAAAGAGATTGAAATAACCCGACTCGAGACCTGCGGTACATGTGACGGGTCAGGTGCAA AACCAGGAACAAAGCCAACCAAGTGTAGTCCATGTGGTGGACAAGGTCAAGTTGTGTCTTCAGTTAGAACGCCATTAGGTGTCTTCCAGCAGGTGACAAC ATGCAACACCTGCGGTGGAACTGGGGAATCATTCAGCCCTTGCAACACATGTTCCGGTGATGGGCGTGTTCGGAAAACGAAACGAATCAGTTTGAAAGTT CCAGCTGGTGTGGACTCTGGTAGCCGTCTAAGGGTTCGTTCTGAAGGCAATGCTGGAAAGAGAGGCGGGTCACCTGGTGACCTGTTTGTTATGATAGAAG TCATACCAGATCCTGTCCTGAAAAGGGACGACACAAACATCTTGTACACTTGCAAAATCTCATATGTCGATGCAATATTGGGTACTACAATTAGGGTCCC AACGGTAGATGGCGAGGTTGATCTGAAGATTCCAGCTGGGACACAACCAAACACCACACTGGTGATGGCAAAGAAGGGGGTGCCTGCTCTGAACAAGAGC AACATGAGAGGTGATCAGTTGGTAAGGGTACAGGTTGAGATCCCAAAGAGATTGAGCAGCGACGAGAGGAAGCTCATTGAAGAACTAGCAGATCTTAGTA AAGCTAAAACAGCAACCACCAAGAGATGA
AA sequence Show only first row Show all	>Lus10035920 pacid=23141266 polypeptide=Lus10035920 locus=Lus10035920.g ID=Lus10035920.BGIv1.0 annot-version=v1.0 MAVSPCGSTSLAQWGTHPQVIPRSYMTNRIVSCQYSLRNKDRCLAAPSSIFAQDSLPTISFMGHSNALHRRRGARFIVRADADYYSVLGVSKDSAKSEIK SAYRKLARNYHPDVNNSIWTTTGYGTKCQVVPQVLSDDEKRSLYDRYGEAGVKGAGMGSSDFSNPFDLFESLFDMGNINMGGMGGRASRNAGVDGQDEYY NLVLTFNEAIFGVEKEIEITRLETCGTCDGSGAKPGTKPTKCSPCGGQGQVVSSVRTPLGVFQQVTTCNTCGGTGESFSPCNTCSGDGRVRKTKRISLKV PAGVDSGSRLRVRSEGNAGKRGGSPGDLFVMIEVIPDPVLKRDDTNILYTCKISYVDAILGTTIRVPTVDGEVDLKIPAGTQPNTTLVMAKKGVPALNKS NMRGDQLVRVQVEIPKRLSSDERKLIEELADLSKAKTATTKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22360			DNAJ heat shock family protein...		Lus10035920 [exp]	0	1
AT3G24590		PLSP1	plastidic type i signal peptid...		Lus10034925 [exp]	1.4	0.8223
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10001196 [exp]	2.0	0.8137
AT1G67660			Restriction endonuclease, type...		Lus10011377 [exp]	18.0	0.7892
AT1G04940		AtTic20-I, atTI...	translocon at the inner envelo...		Lus10033195 [exp]	19.1	0.8191
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10015612 [exp]	27.9	0.7480
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Lus10030544 [exp]	28.9	0.8169
AT5G02710			unknown protein		Lus10015040 [exp]	33.9	0.7587
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Lus10041564 [exp]	38.8	0.7926
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10029404 [exp]	39.0	0.7284
AT5G38290			Peptidyl-tRNA hydrolase family...		Lus10031327 [exp]	46.6	0.7914

Compare expression of checked genes

Lus10035920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.