Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22340 191 / 1e-58 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 181 / 5e-57 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22400 184 / 6e-56 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22360 182 / 1e-55 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 176 / 3e-53 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G78270 169 / 2e-50 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT5G59590 135 / 5e-38 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT5G59580 132 / 1e-36 UGT76E1 UDP-glucosyl transferase 76E1 (.1) AT3G46700 131 / 2e-36 UDP-Glycosyltransferase superfamily protein (.1) AT3G46680 130 / 3e-36 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025741 [exp] 324 / 1e-110 AT1G22380 525 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10035903 [exp] 260 / 2e-85 AT1G22360 522 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10032218 [exp] 192 / 2e-59 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024583 [exp] 192 / 2e-59 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10031388 [exp] 189 / 5e-58 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10032220 [exp] 187 / 3e-57 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024584 [exp] 184 / 2e-56 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10010943 [exp] 186 / 1e-55 AT1G22400 535 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10007421 [exp] 179 / 3e-54 AT1G22400 529 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G095000 [exp] 228 / 5e-73 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.005G073766 [exp] 221 / 1e-70 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073800 [exp] 221 / 1e-70 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G021500 [exp] 194 / 6e-60 AT1G22360 501 / 3e-175 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 194 / 7e-60 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G022000 [exp] 192 / 1e-59 AT1G22360 499 / 1e-174 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G022100 [exp] 192 / 2e-59 AT1G22380 489 / 2e-170 UDP-glucosyl transferase 85A3 (.1) Potri.016G022400 [exp] 191 / 4e-59 AT1G22360 495 / 4e-173 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 190 / 1e-58 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.007G132400 [exp] 189 / 3e-58 AT1G22340 527 / 0.0 UDP-glucosyl transferase 85A7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10035921 pacid=23141188 polypeptide=Lus10035921 locus=Lus10035921.g ID=Lus10035921.BGIv1.0 annot-version=v1.0 ATGTTTCACATATTAAAATCCGAAGCTGAGAGCTGCTTGAAATCAAGTGCAATCATCTTCAACACATTCGACGCACTGGAAGAACAAGTGCTAGCGTCTA TAAGAACGATCTTCCCCAACAAGATCTACACAATGGGACCCCACCATTTACTCGGAAAGGAAGACGATACAGATGATCAATCAACAATATCCATAAGTTC GACTCTGTGGAAAGAAGACCAGAAATGTATGGAATGGCTCGATCAACAAGAACCAAAATCAGTTGTTTACGTCAACTACGGAAGCGTGACAGTGATGTCG GAGGAACATCTAAAGGAATTTGCTTGGGGGCTTGCAAACAGCAACGTTCCCTTCTTATGGATTGTGAGAGGGGATATTGTGATGGGGGAATCTGAGTCTT TTTTGCCAGCAGAGTTTCTTGAAGAAATTAAGGATAGAGGGTATCTAGCTAGTTGGTGCATGCAGCAGCAAGTGCCATCACATCCATCCGTTGCGGTGTT CTTGACGCACTGCGGTTGGAATTCAACGATGGAGAGTGTGTCGGTTGGTATGCTTGCTTTTTAA
AA sequence Show only first row Show all	>Lus10035921 pacid=23141188 polypeptide=Lus10035921 locus=Lus10035921.g ID=Lus10035921.BGIv1.0 annot-version=v1.0 MFHILKSEAESCLKSSAIIFNTFDALEEQVLASIRTIFPNKIYTMGPHHLLGKEDDTDDQSTISISSTLWKEDQKCMEWLDQQEPKSVVYVNYGSVTVMS EEHLKEFAWGLANSNVPFLWIVRGDIVMGESESFLPAEFLEEIKDRGYLASWCMQQQVPSHPSVAVFLTHCGWNSTMESVSVGMLAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10035921 [exp]	0	1
AT1G68290		ENDO2 ,ENDO 2	endonuclease 2 (.1)		Lus10034336 [exp]	3.5	0.9086
AT5G63180			Pectin lyase-like superfamily ...		Lus10014887 [exp]	4.2	0.8815
AT3G53980			Bifunctional inhibitor/lipid-t...		Lus10040249 [exp]	5.5	0.9112
AT1G80930			MIF4G domain-containing protei...		Lus10002210 [exp]	7.0	0.8788
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10023882 [exp]	8.1	0.8712
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030590 [exp]	13.3	0.8903
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10029197 [exp]	13.4	0.8404
AT1G23030		PUB11	ARM repeat superfamily protein...		Lus10039197 [exp]	15.9	0.8898
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10040260 [exp]	18.7	0.8604
AT4G09890			Protein of unknown function (D...		Lus10033529 [exp]	20.0	0.8653

Compare expression of checked genes

Lus10035921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.