Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10310 98 / 1e-27 unknown protein AT4G37810 57 / 2e-11 unknown protein AT3G13898 52 / 1e-09 unknown protein AT4G14723 44 / 7e-07 EPFL4, CLL2 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein AT2G30370 46 / 8e-07 EPFL6, CHAL EPF1-like 6, CHALLAH, allergen-related (.1.2) AT3G22820 44 / 1e-06 EPFL5, CLL1 epidermal patterning factor like 5, CHALLAH-LIKE 1, allergen-related (.1) AT1G80133 36 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025740 [exp] 163 / 1e-53 AT5G10310 100 / 2e-28 unknown protein Lus10008387 [exp] 62 / 2e-13 AT3G13898 76 / 9e-19 unknown protein Lus10006016 [exp] 64 / 3e-13 AT3G13898 76 / 4e-17 unknown protein Lus10011591 [exp] 58 / 9e-12 AT4G37810 102 / 6e-29 unknown protein Lus10019254 [exp] 52 / 2e-09 AT4G37810 74 / 5e-18 unknown protein Lus10028241 [exp] 47 / 9e-08 AT4G37810 74 / 2e-18 unknown protein Lus10007240 [exp] 48 / 2e-07 AT4G37810 75 / 2e-17 unknown protein Lus10011570 [exp] 46 / 3e-07 AT4G37810 79 / 8e-20 unknown protein Lus10006616 [exp] 43 / 1e-06 AT4G14723 99 / 5e-29 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G095400 [exp] 110 / 2e-32 AT5G10310 105 / 2e-30 unknown protein Potri.005G073700 [exp] 106 / 8e-31 AT5G10310 102 / 7e-29 unknown protein Potri.002G112900 [exp] 67 / 3e-15 AT4G37810 90 / 9e-24 unknown protein Potri.003G042300 [exp] 59 / 4e-12 AT3G13898 80 / 4e-20 unknown protein Potri.018G130700 [exp] 48 / 3e-08 AT1G80133 62 / 1e-13 unknown protein Potri.008G157300 [exp] 45 / 5e-07 AT4G14723 69 / 4e-16 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Potri.013G155500 [exp] 44 / 2e-06 AT2G30370 93 / 7e-25 EPF1-like 6, CHALLAH, allergen-related (.1.2) Potri.019G128200 [exp] 40 / 5e-05 AT2G30370 110 / 7e-32 EPF1-like 6, CHALLAH, allergen-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035922 pacid=23141000 polypeptide=Lus10035922 locus=Lus10035922.g ID=Lus10035922.BGIv1.0 annot-version=v1.0 ATGAACCACCATTTCACTTTCTTCTTCTTCTTCTTCTTCTATTGTTGTGGGTTTCAGGTGGCTGAAGGTGCGTTGTTAGTTGAGGAGAAGATAAGGTTGG GATCAACACCGCCAAGCTGTCACAATAAATGCAATAGCTGCCATCCCTGCATGGCGGTCCAAGTCCCGACTATGCCGGGTCACAGCAGAGTCCAACCGGG TTCTTCTTCTTCCTCCTCCGAGTTGTTTGAGTCGTACGATAATCCCCCAGATGGGAACAGGTACTCCAACTACAAACCGATCGGCTGGAAGTGTCGCTGT GGTAACCACTTCTACAACCCTTAG
AA sequence Show only first row Show all	>Lus10035922 pacid=23141000 polypeptide=Lus10035922 locus=Lus10035922.g ID=Lus10035922.BGIv1.0 annot-version=v1.0 MNHHFTFFFFFFFYCCGFQVAEGALLVEEKIRLGSTPPSCHNKCNSCHPCMAVQVPTMPGHSRVQPGSSSSSSELFESYDNPPDGNRYSNYKPIGWKCRC GNHFYNP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10310			unknown protein		Lus10035922 [exp]	0	1
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10027874 [exp]	3.2	0.7609
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Lus10007755 [exp]	12.8	0.7005
AT5G06270			unknown protein		Lus10021305 [exp]	13.3	0.7338
AT3G06145			unknown protein		Lus10004420 [exp]	13.6	0.7507
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10023968 [exp]	20.7	0.7410
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10002824 [exp]	21.4	0.7275
AT5G60210		RIP5	ROP interactive partner 5 (.1....		Lus10011643 [exp]	22.6	0.7340
AT1G12330			unknown protein		Lus10004335 [exp]	30.9	0.7080
AT4G09810			Nucleotide-sugar transporter f...		Lus10020837 [exp]	34.3	0.7380
AT4G20880			ethylene-responsive nuclear pr...		Lus10038459 [exp]	34.3	0.7158

Compare expression of checked genes

Lus10035922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.