Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22410 838 / 0 Class-II DAHP synthetase family protein (.1) AT4G39980 832 / 0 DHS1 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) AT4G33510 810 / 0 DHS2 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025739 [exp] 944 / 0 AT4G39980 848 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10000636 [exp] 889 / 0 AT4G39980 860 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10023152 [exp] 882 / 0 AT4G39980 847 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10001002 [exp] 780 / 0 AT4G33510 818 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2) Lus10011022 [exp] 640 / 0 AT4G33510 658 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G073300 [exp] 861 / 0 AT4G39980 891 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Potri.005G162800 [exp] 848 / 0 AT1G22410 869 / 0.0 Class-II DAHP synthetase family protein (.1) Potri.002G099200 [exp] 847 / 0 AT1G22410 845 / 0.0 Class-II DAHP synthetase family protein (.1) Potri.007G095700 [exp] 801 / 0 AT4G39980 796 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Potri.001G150500 [exp] 793 / 0 AT4G33510 819 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01474 [flax] [poplar] DAHP_synth_2 Class-II DAHP synthetase family
Representative CDS sequence Show only first row Show all	>Lus10035923 pacid=23141087 polypeptide=Lus10035923 locus=Lus10035923.g ID=Lus10035923.BGIv1.0 annot-version=v1.0 ATGGCATCTTCTTCCTCCAGCCATGATGCGAGTTTATATCTTCTCAACAGCAGGGCCAACACCCAACCCACCAACCATCCTCTGACGAAGAAGAAGACGA ACAAGAAATACAGAAATGGCTCTTTCCACTCTTTCCTCCAAGTCCATCCACGTCTCCTCCTCCTCTCCTTCCCTTTCCTCTCACAACAATCAGCTCCAAC AACCCCTCCACTTGTCCCTCTGGAAGAAGAATGCCACCGCTTCCAGATCCAACCTTCCTTCCATCTCCGCTGTTCACGCCGCCGAGCCCACCAAGAACTC TGTCCCCGCCGCCGCCGCCGCGGTCGTCCCTCCTCCCCTCCTTCTCCTGTTTCCGCCGGTGGAAAGTGGAGTCTGGAGAGCTGGAAGACGAAGAAGGCAT TGCAGCTACCCGAGTACCCCAACGCCAACGAGCTCAACGATGTCCTGAAGACCATTGAAGAGTTCCCGCCCTTGGTGTTCGCCGGTGAAGCCAGGAGTCT GGAAGAGAAATTGGGGGATGCTGCTTTTGGTAAAGCTTTCTTGTTGCAGGGAGGCGATTGTGCTGAGAGCTTCAAGGAGTTCAATGCTAATAATATCAGG GATACCTTCAGGATCTTGCTCCAGATGGGTGCTGTTCTTATGTTTGGCGGTCAAATGCCTGTCATTAAGGTGGGGAGAATGGCTGGTCAATTTGCAAAGC CTAGGTCGGATACATTTGAAGAGAAAGATGGAAAGAAGGTTCACCACTCTCAGTTTCACAGCTACAAAGGGGACAATATCAATGGGGATGCTTTTGATGA GAAGTCAAGGACTCCAGATCCACAGAGGATGATTAGAGCCTACTGCCAGTCTGCTGCTACTTTGAATCTCCTCAGGGCGTTTGCCACTGGTGGGTATGCT GCGATGCAAAGGGTCACCCAGTGGAATCTTGATTTCGCAGAGCGTAGCGAGCAGGGAGACAGGTATCAGGAATTGGCTAATCGGGTTGATGAGGCCTTAG GATTTATGGCTGCTGCTGGACTGACAGTGGATCATCCTATCATGACAACAACTGAATTCTGGACTTCCCATGAGTGCTTGCTCTTGCCATATGAGCAATC ACTGACAAGGTTGGATTCGACATCTGGGCTGTACTATGATTGCTCTGCTCATATGGTGTGGTGTGGAGAAAGGACTCGTCAACTTGATGGGGCACATGTT GAGTTCCTCAGAGGAATCTCCAATCCTCTTGGAATCAAGGTTAGCCAGAAGATGGACCCAACTGAGTTGGTGAAACTGATTGAGATCTTGAACCCTGCAA ACAAGCCAGGGAGGATAACAATCATATGCAGAATGGGAGCTGAAAACATGAGAGTGAAGCTTCCCCATTTGATCAGAGCTGTACGTAGGTCTGGACAAAT TGTTACATGGGTCTCTGATCCTATGCATGGTAACACCATCAAGGCACCATGCGGTCTCAAAACACGCCCCTTCGATAATATCATGGCTGAAGTTCGGGCA TTCTTTGATGTGCACGAGCAAGAAGGAACGTATCCGGGAGGAATTCACCTGGAGATGACTGGGCAGAATGTGACAGAGTGCATAGGAGGATCTCGCACTG TAACTTTCGATGACTTGAGCTCGCGCTACCATACCCACTGTGATCCAAGACTGAATGCCTCTCAATCTCTGGAGCTAGCTTTCATCATAGCCGAGCGACT GAGGAAGAGGAGGATGAGAATGTAG
AA sequence Show only first row Show all	>Lus10035923 pacid=23141087 polypeptide=Lus10035923 locus=Lus10035923.g ID=Lus10035923.BGIv1.0 annot-version=v1.0 MASSSSSHDASLYLLNSRANTQPTNHPLTKKKTNKKYRNGSFHSFLQVHPRLLLLSFPFLSQQSAPTTPPLVPLEEECHRFQIQPSFHLRCSRRRAHQEL CPRRRRRGRPSSPPSPVSAGGKWSLESWKTKKALQLPEYPNANELNDVLKTIEEFPPLVFAGEARSLEEKLGDAAFGKAFLLQGGDCAESFKEFNANNIR DTFRILLQMGAVLMFGGQMPVIKVGRMAGQFAKPRSDTFEEKDGKKVHHSQFHSYKGDNINGDAFDEKSRTPDPQRMIRAYCQSAATLNLLRAFATGGYA AMQRVTQWNLDFAERSEQGDRYQELANRVDEALGFMAAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMVWCGERTRQLDGAHV EFLRGISNPLGIKVSQKMDPTELVKLIEILNPANKPGRITIICRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDNIMAEVRA FFDVHEQEGTYPGGIHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRMRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22410			Class-II DAHP synthetase famil...		Lus10035923 [exp]	0	1
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10025739 [exp]	1.0	0.9763
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10041651 [exp]	1.4	0.9753
AT3G17390		MAT4, SAMS3, MT...	S-ADENOSYLMETHIONINE SYNTHETAS...		Lus10038044 [exp]	2.8	0.9681
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10034449 [exp]	4.2	0.9717
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Lus10011155 [exp]	4.5	0.9656
AT4G39230			NmrA-like negative transcripti...		Lus10026348 [exp]	5.3	0.9619
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10019277 [exp]	5.5	0.9635
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10008677 [exp]	7.1	0.9546
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10007907 [exp]	7.9	0.9548
AT4G39230			NmrA-like negative transcripti...		Lus10042313 [exp]	8.4	0.9503

Compare expression of checked genes

Lus10035923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.