Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22420 417 / 3e-147 Peroxidase superfamily protein (.1) AT5G19890 238 / 5e-77 Peroxidase superfamily protein (.1) AT4G36430 238 / 6e-77 Peroxidase superfamily protein (.1) AT5G06730 233 / 1e-74 Peroxidase superfamily protein (.1) AT2G18150 231 / 4e-74 Peroxidase superfamily protein (.1) AT5G66390 231 / 4e-74 Peroxidase superfamily protein (.1) AT5G06720 228 / 7e-73 ATPA2 peroxidase 2 (.1) AT2G18140 228 / 8e-73 Peroxidase superfamily protein (.1) AT3G50990 225 / 7e-72 Peroxidase superfamily protein (.1) AT2G38390 220 / 9e-70 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025737 [exp] 356 / 2e-125 AT2G22420 270 / 2e-91 Peroxidase superfamily protein (.1) Lus10027984 [exp] 225 / 1e-71 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10008173 [exp] 224 / 4e-71 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10041784 [exp] 221 / 2e-70 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10010634 [exp] 221 / 3e-70 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10027989 [exp] 221 / 5e-70 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10037786 [exp] 221 / 1e-69 AT4G16270 331 / 8e-112 Peroxidase superfamily protein (.1) Lus10034207 [exp] 219 / 2e-69 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10020994 [exp] 218 / 4e-69 AT1G49570 418 / 5e-147 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G096200 [exp] 407 / 2e-143 AT2G22420 521 / 0.0 Peroxidase superfamily protein (.1) Potri.005G072800 [exp] 404 / 3e-142 AT2G22420 521 / 0.0 Peroxidase superfamily protein (.1) Potri.001G011200 [exp] 239 / 4e-77 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G012901 [exp] 234 / 2e-75 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) Potri.001G011000 [exp] 234 / 3e-75 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.013G083600 [exp] 231 / 3e-74 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.003G214800 [exp] 230 / 9e-74 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.003G214700 [exp] 229 / 3e-73 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.016G058200 [exp] 228 / 5e-73 AT5G06720 428 / 2e-151 peroxidase 2 (.1) Potri.002G031200 [exp] 228 / 1e-72 AT1G44970 492 / 6e-176 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10035925 pacid=23141262 polypeptide=Lus10035925 locus=Lus10035925.g ID=Lus10035925.BGIv1.0 annot-version=v1.0 ATGTCTCTTCTCTCGGCAGCAGTAGCAGCCGGAGCAGGCACCGCGGCGGTTTTTCCTCTTGTTATTTCCCTCTTCCTCCCTAATCTCTGTTTTTTGTTTG AGGGATGTGATGGTTCGATGCTGCTGGATGACACGGACACCATGCTAGGGGAGAAACTTTCCCTTTCCAATATCGATTCCCTCCGATCATACAACCTCGT CGACCAAATCAAGTCGCGGCTTGAGAAATCATGCCCCGGTGTCGTCTCCTGCGCCGACATCATCATCATGGCCTCCCGTGACGCTGTTTCCCTCACGGGT GGGCCCCAGTGGGAAGTGAAGCTAGGGAGGCTGGACAGTCTGACGGCGAGCCAGGCCGACGCCGACGCAATCATGCCAAGCCCGAGAGCCAACGCGACGA TGCTGATCGACCTCTTCGAGAGATTCAACCTCTCTGTAAAAGACATGGTTGCGCTCTCAGGGTCCCACTCCATAGGGAAAGGACGCTGCTTCTCCATCCA GTTCCGCCTCTACAACCAGTCGGGGTCGGGCCGGCCCGACCCGGCAATCGAGCCAGGGTACAGGCAGAAGCTGATGGAGCTTTGCCCGATGGGGGGAGAC GAGAACGTGACGGTGGGTTTGGATTCGACTCCGCTAGTGTTCGACAACATGTATTTCAAGGATTTGGTGGGCGGGAGAGGGTTCTTGAACTCCGACGAAA CGCTCTTCACTTATCCAATCACCAGGGAGTACGTGGAGGAGTTCAGCAGGGATGAGGATGCGTTTTTTGAGGCGTTTGCGGAAGGGATGATTAAGATGGG TGACTTGCAGTCTGGGCTGCCAGGTGAAGTCAGGAGGAACTGTCGGGTTGCTAATGGCGGCCGGCAGGTCAGCAATCGATTGAGCAGCTTCAGTTCCCCC GGCCGCCATTACAGATCAAAGAAAGTAATGTAA
AA sequence Show only first row Show all	>Lus10035925 pacid=23141262 polypeptide=Lus10035925 locus=Lus10035925.g ID=Lus10035925.BGIv1.0 annot-version=v1.0 MSLLSAAVAAGAGTAAVFPLVISLFLPNLCFLFEGCDGSMLLDDTDTMLGEKLSLSNIDSLRSYNLVDQIKSRLEKSCPGVVSCADIIIMASRDAVSLTG GPQWEVKLGRLDSLTASQADADAIMPSPRANATMLIDLFERFNLSVKDMVALSGSHSIGKGRCFSIQFRLYNQSGSGRPDPAIEPGYRQKLMELCPMGGD ENVTVGLDSTPLVFDNMYFKDLVGGRGFLNSDETLFTYPITREYVEEFSRDEDAFFEAFAEGMIKMGDLQSGLPGEVRRNCRVANGGRQVSNRLSSFSSP GRHYRSKKVM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22420			Peroxidase superfamily protein...		Lus10035925 [exp]	0	1
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10003827 [exp]	4.9	0.7933
AT5G53940			Yippee family putative zinc-bi...		Lus10013992 [exp]	5.7	0.7867
AT4G01400			unknown protein		Lus10012607 [exp]	10.4	0.7897
AT4G37300		MEE59	maternal effect embryo arrest ...		Lus10040706 [exp]	15.9	0.7928
AT5G02180			Transmembrane amino acid trans...		Lus10024374 [exp]	19.3	0.7988
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026152 [exp]	19.9	0.8028
AT4G33490			Eukaryotic aspartyl protease f...		Lus10033503 [exp]	20.1	0.7606
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036099 [exp]	20.7	0.7951
AT5G20220			zinc knuckle (CCHC-type) famil...		Lus10036722 [exp]	21.2	0.8008
AT1G54730			Major facilitator superfamily ...		Lus10029971 [exp]	23.2	0.7661

Compare expression of checked genes

Lus10035925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.