Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65280 541 / 0 GCL1 GCR2-like 1 (.1) AT1G52920 309 / 2e-101 GPCR, GCR2 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) AT2G20770 301 / 9e-99 GCL2 GCR2-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025736 [exp] 775 / 0 AT5G65280 545 / 0.0 GCR2-like 1 (.1) Lus10020719 [exp] 337 / 1e-112 AT1G52920 578 / 0.0 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) Lus10033701 [exp] 310 / 5e-102 AT2G20770 587 / 0.0 GCR2-like 2 (.1) Lus10031638 [exp] 125 / 2e-31 AT2G20770 238 / 3e-76 GCR2-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G072500 [exp] 574 / 0 AT5G65280 586 / 0.0 GCR2-like 1 (.1) Potri.007G096500 [exp] 570 / 0 AT5G65280 553 / 0.0 GCR2-like 1 (.1) Potri.001G403200 [exp] 332 / 1e-110 AT1G52920 601 / 0.0 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) Potri.013G134700 [exp] 303 / 2e-99 AT2G20770 605 / 0.0 GCR2-like 2 (.1) Potri.011G122300 [exp] 105 / 2e-26 AT1G52920 171 / 7e-52 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF05147 [flax] [poplar] LANC_like Lanthionine synthetase C-like protein
Representative CDS sequence Show only first row Show all	>Lus10035926 pacid=23141274 polypeptide=Lus10035926 locus=Lus10035926.g ID=Lus10035926.BGIv1.0 annot-version=v1.0 ATGGGCACTAAAACTGCCAGCAATAATATGAATATCCCTCCTTGTCAAGGACACAACAAATCCTCATCTTCCTCCTCTTCCACCGGCGATGATGATCAGG TGATCATGCCCAACCGCCTTCCTCCACCACTACAACTACAACTACCCTTTGATCTCACTACTCTTTTGGCTCTCCCTTCTCACAATTTCCTCGCCGCCGC CCTGTCTCTCAAAAACCAGGTCGTGGAGGCGACTTGGGGAGGCGGAGATGGTTGTTTGAGCTCCGACCCGACCCTGTACACCGGTTTGCTAGGCACCGCT TTCACCTGTTTGCGTTCTTACGACGTCACCGCCGACCCACTCGACTTGGATCTCTGCTCCCGCATTGTCGACGCCTGTGCCGCCGCGCCTGCTCCCTCCC TCAGGCACGTGACATTTATATGCGGCAGAGGAGGAATATACGCCATTGGTGCGGTAGTTGCCAATTACAAAGGGGACCAGCACAAACGTGACTTCTTCTT AAACATGTTCCTCAAGACGGCTCAAGAGCTTGCTCTGCCAATTGGGCCTCAGGAAGGTGGCTTTGGAATGTCCTACGAGTTGATGTACGGCCGAGCCGGC TTCCTATGGGCTGCTCTCTTCATCGACAAGCATCTTGGTGAAGGCACACTCCCATTTTACCTTGTGCGACCTGTGGTGGATGCGGTGTTGGCAGGCGGCA GGGCAGGTGCACCTGACAACACTGCCTGCCCGCTCATGTATAGATGGCACGGAACTAGGTACTGGGGAGCTGCGAGTGGCCTTGCTGGAATCCTTCACGT ACTGCTTCACTTCCCACTCAGCAAGCAGGATGCGGAGGATGTGAAGGCCACTCTAAGGTACATGATGAGCAAAAGGTTCCCACATAGTGGGAACTACCCT TCGAGTGAAGGGAATCCTAGGGACACCTTTGTTCAGTGGTCCCATGGCGCGACAGGCATGGCAATCACGCTGCGCAAAGCGTCTCAGGTTTTTCCGGAAG AGAAGGATTTCAGGGACGCGGCCATAGAGGCAGGAGAAGTAGTGTGGAGGAGCGGGGCGGAGGGGAAGAAGGCCGGACTTGCGGATGGTGTGGCTGGGAA TGCGTATGCATTTCTCTCTCTTTATCGTCTTACTGGGGACAGGGTTTACGAGGAACGTGCAAAGGCATTTGCGGGATACTTGTATCATAACGTGACGAGT ACGAGTAACAGTGGTTCGAATGAGGTAATTGGGTTTTTGAATGATGATGGAAGCTGGTCTCTTTTCCAAGGGCTAGCTGGAATTGCTTGCCTTTGGTTCG ATGTGTTTGCCCCTCAAAATGCTCGATTCCCTGGATATGAATTGTAA
AA sequence Show only first row Show all	>Lus10035926 pacid=23141274 polypeptide=Lus10035926 locus=Lus10035926.g ID=Lus10035926.BGIv1.0 annot-version=v1.0 MGTKTASNNMNIPPCQGHNKSSSSSSSTGDDDQVIMPNRLPPPLQLQLPFDLTTLLALPSHNFLAAALSLKNQVVEATWGGGDGCLSSDPTLYTGLLGTA FTCLRSYDVTADPLDLDLCSRIVDACAAAPAPSLRHVTFICGRGGIYAIGAVVANYKGDQHKRDFFLNMFLKTAQELALPIGPQEGGFGMSYELMYGRAG FLWAALFIDKHLGEGTLPFYLVRPVVDAVLAGGRAGAPDNTACPLMYRWHGTRYWGAASGLAGILHVLLHFPLSKQDAEDVKATLRYMMSKRFPHSGNYP SSEGNPRDTFVQWSHGATGMAITLRKASQVFPEEKDFRDAAIEAGEVVWRSGAEGKKAGLADGVAGNAYAFLSLYRLTGDRVYEERAKAFAGYLYHNVTS TSNSGSNEVIGFLNDDGSWSLFQGLAGIACLWFDVFAPQNARFPGYEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65280		GCL1	GCR2-like 1 (.1)		Lus10035926 [exp]	0	1
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10010770 [exp]	3.0	0.8465
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Lus10016758 [exp]	4.0	0.8737
AT3G05625			Tetratricopeptide repeat (TPR)...		Lus10015207 [exp]	8.8	0.8853
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10002442 [exp]	10.7	0.8569
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10011683 [exp]	12.5	0.8382
AT5G20140			SOUL heme-binding family prote...		Lus10001847 [exp]	15.0	0.8492
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Lus10022454 [exp]	20.5	0.8540
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10004200 [exp]	23.2	0.8607
AT2G01510			Tetratricopeptide repeat (TPR)...		Lus10042198 [exp]	24.2	0.7673
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017149 [exp]	25.3	0.8321

Compare expression of checked genes

Lus10035926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.