Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65290 1000 / 0 LMBR1-like membrane protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025735 [exp] 1505 / 0 AT5G65290 1004 / 0.0 LMBR1-like membrane protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G096900 [exp] 1175 / 0 AT5G65290 985 / 0.0 LMBR1-like membrane protein (.1.2) Potri.005G072100 [exp] 1156 / 0 AT5G65290 924 / 0.0 LMBR1-like membrane protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04791 [flax] [poplar] LMBR1 LMBR1-like membrane protein
Representative CDS sequence Show only first row Show all	>Lus10035927 pacid=23140969 polypeptide=Lus10035927 locus=Lus10035927.g ID=Lus10035927.BGIv1.0 annot-version=v1.0 ATGTGGGTGTTTTACCTGATCTCGTTACCACTAACCCTAGGCATGGTCGTCTCGACGTTGAGATACTTCGCCGGGCCGGAGGTGCCTCGTTACGTTCTGT TCACTGTCGCTTACACATGGTTTTGTTCCCTCTCCATTATTATCCTCGTTCCCGCCGATATCTGGACGACAATGTTTGGGTTCGACAGAGACGCCATTTC TTTCCTCTGGAGCTGGTCGTATTGGAGTACTTTCTTACTTACTTGGGCTATGGTGCCCCTTATTCAGGGTTTCGAAGATGCTGGAGACTTTACTGTGACG GAAAGACTAAAGACTAGCATTCATGCGAACTTAGTCTTCTATTTGATTGTCGGAGCTGTCGGCCTATTTGGCCTCATTCTTCTCATTATGATGGATAAGA TAAGGACTAATGGCGTGCTTGGTTTTGCCATGGCGTGCTCAAATACTTTTGGACTTGTGACGGGTGCATTTCTTCTTGGCTTTGGTTTGAGTGAGATTCC AAAAACACTGTGGAGATATGCAGATTGGATTGTACGGCAAAAAGCCCTTTCTCATAAAATTGCAAAAATGGCTGTGAAACTTGATGATGCTCATCAGGAG TTCTCAAATGCCATTGTGGTCGCTCAAGCAACATCAAATCAGATGTCCAAGCGTGATCCCTTGAGGCCCTACATGGATGTCATTGACAATATGCTTGTTC AACTGTTTAGGCAAGATCCATCTTTTAAGCCACAAGGTGGTCGACTGGGGGAAAATGATATGGACTATGACACAGATGAGAAGTCAATGGCAACTCTCAG GCGACATCTGCGGCGAGCTCGGGATGAATATTATCGTTACAAGAGCGAGTATATGACATTTGTCTTGGAAGCCCTTGAGCTCGAAGATACGATTAAAAAT TATGAACGGAGACAATCAACTGGATGGAAATACTTATCCAGCTTCAGATCTGCTAGAAGTGGTAAATTCGGTTCACTTTTGGATACCATAGAATTTCTTT GGAGATGCATCCTGAGGAAGCAACTTGAGAAGCTCTTGGCTGTGTTACTTGGCACCATGTCAGCTGCAATTCTTTTAGCAGAGGCAACACTTGTAATCAC TGGTGTTGATTTGTCACTTTTTTCTATCCTTATTAAATCTGTGGGAAAACGAGAAATTTTAGTACAGGTGTCAGCTTTTGTGCCTTTGATGTATATGTGC ATCTGTACTTACTACTCATTGTTCAAGATTGGAATGTTGATGTTCTACTCACTAACACCCAGGCAAACAAGCTCAGTCAGCTTGCTTATGATATGCTCGA TGATTGCTCGGTATGCTCCCCCAATTTCATACAACTATCTCAACCTCATTAATCTTGGCGATAGGCAAACAATGTTTGAAAAGCGTATGGGGAAGATTAA TGATGCGGTGCCCTTCTTTGGCGTTAGCTTTAATAGAATCTATCCACTTTTCATGGTTGTTTATACTCTGCTGGTCGCAAGCAATTTTTTCGACCGTGTA CTAGGTTGTTTTGGGAGTTGGAAAAAGTTTGGGTTTCAAACTGAGGTAGATGATACAGATGGCTTTGATCCTTCAGGGCTAATTATCCTTCAGAAGGAAA GATCATGGCTAGAACAAGGACAGAGAGTGGGTGAGCATGTTGTCCCACTGGCAAGGAACTTTAATGGTGTGGATGTGGAGGCTGCCAACAACAATATGGA TAAGACGAGTGTTGAAATGAAGGCAACGGAAAATTTGATTAGCGATGATGGGATGGGAAGTTCATCTAGAGTTATGAAGGAAGAGAGTCGTAGATCCAAT CCGAGCAGAGAAGCCCTGAGCAGTAAGTATGCTGCTGTTAGACAGCAGAGTAGAATTTCCAACATGAGGCCACAGGAGAAGAACATAGTCTCTGCTAAGG TGTCATTGCTTGATGCAGGCAACTCTATTTCTTCTGACAACACAAATCGAGGGAAGTCTTTGGGCCTCACTGCCAGATGGGAGTCGATGAAGAATGGTTT CCAAACTTTCAAAGCTAATATAGAAGCAAAACGATTTCTTAATCTACGTCAGATGCAGGAAACTAAGCTCGTGTCTCATGATTCATCATCACCTGACAAT CTTGACGAGATATTCCAGAGATTGAGACGACCCTCTGATGATCATGGAAGTGTAAGTGACGAGGACGATGCTGGGGATGAGATCAGAGCTCCACGGCCTA CCAGATGA
AA sequence Show only first row Show all	>Lus10035927 pacid=23140969 polypeptide=Lus10035927 locus=Lus10035927.g ID=Lus10035927.BGIv1.0 annot-version=v1.0 MWVFYLISLPLTLGMVVSTLRYFAGPEVPRYVLFTVAYTWFCSLSIIILVPADIWTTMFGFDRDAISFLWSWSYWSTFLLTWAMVPLIQGFEDAGDFTVT ERLKTSIHANLVFYLIVGAVGLFGLILLIMMDKIRTNGVLGFAMACSNTFGLVTGAFLLGFGLSEIPKTLWRYADWIVRQKALSHKIAKMAVKLDDAHQE FSNAIVVAQATSNQMSKRDPLRPYMDVIDNMLVQLFRQDPSFKPQGGRLGENDMDYDTDEKSMATLRRHLRRARDEYYRYKSEYMTFVLEALELEDTIKN YERRQSTGWKYLSSFRSARSGKFGSLLDTIEFLWRCILRKQLEKLLAVLLGTMSAAILLAEATLVITGVDLSLFSILIKSVGKREILVQVSAFVPLMYMC ICTYYSLFKIGMLMFYSLTPRQTSSVSLLMICSMIARYAPPISYNYLNLINLGDRQTMFEKRMGKINDAVPFFGVSFNRIYPLFMVVYTLLVASNFFDRV LGCFGSWKKFGFQTEVDDTDGFDPSGLIILQKERSWLEQGQRVGEHVVPLARNFNGVDVEAANNNMDKTSVEMKATENLISDDGMGSSSRVMKEESRRSN PSREALSSKYAAVRQQSRISNMRPQEKNIVSAKVSLLDAGNSISSDNTNRGKSLGLTARWESMKNGFQTFKANIEAKRFLNLRQMQETKLVSHDSSSPDN LDEIFQRLRRPSDDHGSVSDEDDAGDEIRAPRPTR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65290			LMBR1-like membrane protein (....		Lus10035927 [exp]	0	1
AT1G17500			ATPase E1-E2 type family prote...		Lus10006017 [exp]	2.6	0.7158
AT2G15900			Phox-associated domain;Phox-li...		Lus10027939 [exp]	6.2	0.7647
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	6.4	0.7676
AT2G36360			Galactose oxidase/kelch repeat...		Lus10034159 [exp]	7.9	0.6725
AT3G49060			U-box domain-containing protei...		Lus10027490 [exp]	8.9	0.6770
AT5G23490			unknown protein		Lus10004286 [exp]	9.2	0.7546
AT3G33530			Transducin family protein / WD...		Lus10043261 [exp]	10.4	0.7101
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030817 [exp]	11.0	0.7602
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10028994 [exp]	15.0	0.7346
AT3G57630			exostosin family protein (.1.2...		Lus10026311 [exp]	15.6	0.6616

Compare expression of checked genes

Lus10035927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.