Plant FIBer expression Database

Lus10035928 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025734
[exp]
285 / 2e-98 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G072000
[exp]
54 / 4e-09 AT5G65300 41 / 6e-05 unknown protein
Potri.007G097000
[exp]
39 / 0.0008 AT5G65300 / unknown protein
PFAM info
Representative CDS sequence
>Lus10035928 pacid=23141098 polypeptide=Lus10035928 locus=Lus10035928.g ID=Lus10035928.BGIv1.0 annot-version=v1.0
ATGGGGTTATCGGAGCAAGGGCGGGTTTGCAAGAAGCACCATGAAGAAAAGCATGGTGTTTGCGCATCCTGTCTCAGGGACCGCCTCTCCCAGCTCAACC
ACCTCTACAGCAGAGATAAAGCAGCTTCTTCTTCTTCCCATTCCTCTGCTTCCGTCTCATCTTCAACCTCCTGCCGCTCTGATTACGAATCTGCTGAAAC
CCACAACCAAGGGATGCTGAAAGAGACGAACGAGAAGAAGAAGAAGAAGAACAACAACAACAACAACAAGAAGAAGCGCGTGGTCCGCACGCACCGCCGC
AGCGCTTCGTCTAACGAGATAGGGTCGATATCGTTCACCGCTGAGGCGGCCGTGCCTGCTATCAGCGGCGGCGGTGGGATCCCCAATGGGTTAAAGAAGA
GCAGATCCGTAGCGGCGTCGTATTCGTTCGCACCTCAGCCTGCGAGAGCCATGAGCTACTGCGTTGGGGATGATGATATGGGGATTAAGAATACCCATCA
TCATCAACAATATAATCTTTATAACAAGGGTAATAATAATAATAGTAAGGGCAGCAGCGAGGGTTGTGATAATTATGGGAATGAGAAGAAGAAGAAGAAA
GGTGGGTTTTGGTCCAAATTGCTTCATTTGAAGGGGAAGAACAACGGCAATCACAGGGAGGTTATGATCCAGCAGCGAAGGGTGTATTGA
AA sequence
>Lus10035928 pacid=23141098 polypeptide=Lus10035928 locus=Lus10035928.g ID=Lus10035928.BGIv1.0 annot-version=v1.0
MGLSEQGRVCKKHHEEKHGVCASCLRDRLSQLNHLYSRDKAASSSSHSSASVSSSTSCRSDYESAETHNQGMLKETNEKKKKKNNNNNNKKKRVVRTHRR
SASSNEIGSISFTAEAAVPAISGGGGIPNGLKKSRSVAASYSFAPQPARAMSYCVGDDDMGIKNTHHHQQYNLYNKGNNNNSKGSSEGCDNYGNEKKKKK
GGFWSKLLHLKGKNNGNHREVMIQQRRVY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10035928
[exp]
0 1
AT3G49060 U-box domain-containing protei... Lus10014772
[exp]
2.2 0.8363
AT2G16050 Cysteine/Histidine-rich C1 dom... Lus10017477
[exp]
7.7 0.8099
AT1G23090 SULTR3;3, AST91 sulfate transporter 91 (.1) Lus10034603
[exp]
12.0 0.8216
AT4G24120 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) Lus10000879
[exp]
15.5 0.8001
AT1G64230 UBC28 ubiquitin-conjugating enzyme 2... Lus10027846
[exp]
19.5 0.8284
AT1G55200 Protein kinase protein with ad... Lus10040097
[exp]
21.7 0.7815
AT4G10960 UGE5 UDP-D-glucose/UDP-D-galactose ... Lus10003875
[exp]
26.2 0.7805
AT2G45040 Matrixin family protein (.1) Lus10007791
[exp]
26.5 0.7156
AT3G54200 Late embryogenesis abundant (L... Lus10035612
[exp]
30.0 0.7864
AT5G44510 TAO1 target of AVRB operation1 (.1) Lus10017418
[exp]
31.0 0.7181

Lus10035928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.