Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64300 762 / 0 ATGCH, ATRIBA1, RFD1 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) AT2G22450 628 / 0 riboflavin biosynthesis protein, putative (.1) AT5G59750 602 / 0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025733 [exp] 1002 / 0 AT5G64300 757 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10012751 [exp] 861 / 0 AT5G64300 755 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10023161 [exp] 850 / 0 AT5G64300 744 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10040865 [exp] 593 / 0 AT5G59750 714 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) Lus10006669 [exp] 517 / 1e-180 AT5G64300 513 / 5e-179 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10007013 [exp] 513 / 6e-177 AT5G64300 506 / 4e-174 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10005882 [exp] 426 / 6e-145 AT5G59750 502 / 2e-175 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G097300 [exp] 818 / 0 AT5G64300 773 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.001G310500 [exp] 765 / 0 AT5G64300 764 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.017G050400 [exp] 733 / 0 AT5G64300 714 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.005G071600 [exp] 693 / 0 AT5G64300 647 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.001G234900 [exp] 613 / 0 AT5G59750 770 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00926 [flax] [poplar] DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase PF00925 [flax] [poplar] GTP_cyclohydro2 GTP cyclohydrolase II
Representative CDS sequence Show only first row Show all	>Lus10035929 pacid=23141179 polypeptide=Lus10035929 locus=Lus10035929.g ID=Lus10035929.BGIv1.0 annot-version=v1.0 ATGGCTTCTCCTCTTCTTGTTCATTTCCTCCCCTCCCCTTTGGCTCCCTCTCCTTCTCTAGGCTTTCCTGGCTTGCAACCAAAGGGGAACTTTAGCAATG CTGTCTTAACGGCTAGTGCTGCTGGAAAACTGTTCACTAGTTTCAAAGGGGTGGTGGGTCGAACTAAAGTCTCTGTTATTTCTGGAGACAGTGATCTTCT CTCTTTTCCCACAAGTGATAAAACTTTAATGAACTCGCTTTCTGGGATTGACTTGCAACCTGATGCATTCAACTTTGCAACTCTCTCAGCCGAGATGACT CCCATCAGAACTAGTTTCTCTCCTGATAATGATGAATATGACTTGGATCGTCCTACTGAAGGCTTTAGTTCCATCCCTGAAGCACTTGAAGATATCCGAC AAGGCAAGTTTGTGATCGTTGTTGATGATGAAGATCGAGAGAACGAAGGTGACCTAATCATGGCAGCTTCTAAAGTAACTCCTGAAGCTATGGCATTTAT TGTCAAGCATGGAACTGGGATTGTCTGTGTAAGCATGAGAGATGAAGATTTACAGAGATTGCAACTGCCTTTGATGGTATCCACAAAGGAGAACGAAGAA AAGCTATGCACAGCTTTTACAGTGTCAGTTGATGCAAAAGTTGGTACCACAACTGGTGTTTCAGCTCGCGACAGGGCTACAACTATATTGGCCCTTGCAT CGAAGGATTCCAAACCAGAAGATTTCAATCGTCCAGGTCATATATTCCCTCTTAAATATAGGGAGGGAGGGGTACTGAAGAGAGCTGGTCACACTGAAGC TTCTGCGGATCTCTCAATACTGGCTGGTTTGGAGCCTGTTGCAGTTCTCTGTGAGATTGTTGACGATGATGGGTCTATGGCCAGACTACCCAGACTCAGA GAGTTTGCAAAAGCTGAGAATCTCAAGATAATCTCGATAGCTGATCTTATCAGATTCAGGAGGAAAAGGGAGAAACTAGTAGAACGGTCTGCTGTCGCCA GAATACCAACTGTGTGGGGGCCTTTCAAAGCCTACTGTTACAGGTCATTGATTGACGGAATTGAACATATTGCCATGGTTAAAGGAGATATTGGGGAGGG AAAGGATATTCTTGTCCGGGTGCACTCTGAGTGCCTTACTGGAGATATATTTGGTTCAGCAAGATGTGATTGTGGCGATCAGCTAGCACTTGCCATGAAG CAAATTGAAGCAGCTGGTAAGGGTGTGTTGGTTTATCTACGCGGACATGAAGGTAGAGGTATCGGCTTGGGTCATAAGCTTCGAGCTTACAACCTACAAG ATGATGGTCGTGACACTGTTGAAGCCAATGAGGAGCTGGGTCTACCAGTTGACTCCCGTGAATATGGCCTCGGCGCAATGATACTCCGAGATCTAGGAGT TCGCACGATGAAGCTGATGACAAACAATCCATCAAAATATATCGGCCTCAAAGGATACGGCCTCTCAGTTGCTGGAAGAGTGCCATTGATAACTCCAATT ACAACAGAGAACAGAAGATACCTGGAAACAAAGAGGAAAAAGATGGGACATGTCTATGGTCCTGATAATGGCAGCGCTGCTGTTCCTAGTCGTGAAGATG GTTTGTTGGAGGCATAG
AA sequence Show only first row Show all	>Lus10035929 pacid=23141179 polypeptide=Lus10035929 locus=Lus10035929.g ID=Lus10035929.BGIv1.0 annot-version=v1.0 MASPLLVHFLPSPLAPSPSLGFPGLQPKGNFSNAVLTASAAGKLFTSFKGVVGRTKVSVISGDSDLLSFPTSDKTLMNSLSGIDLQPDAFNFATLSAEMT PIRTSFSPDNDEYDLDRPTEGFSSIPEALEDIRQGKFVIVVDDEDRENEGDLIMAASKVTPEAMAFIVKHGTGIVCVSMRDEDLQRLQLPLMVSTKENEE KLCTAFTVSVDAKVGTTTGVSARDRATTILALASKDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASADLSILAGLEPVAVLCEIVDDDGSMARLPRLR EFAKAENLKIISIADLIRFRRKREKLVERSAVARIPTVWGPFKAYCYRSLIDGIEHIAMVKGDIGEGKDILVRVHSECLTGDIFGSARCDCGDQLALAMK QIEAAGKGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGLGAMILRDLGVRTMKLMTNNPSKYIGLKGYGLSVAGRVPLITPI TTENRRYLETKRKKMGHVYGPDNGSAAVPSREDGLLEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10035929 [exp]	0	1
AT2G41860		CPK14	calcium-dependent protein kina...		Lus10025528 [exp]	1.4	0.9684
AT5G44390			FAD-binding Berberine family p...		Lus10001965 [exp]	3.5	0.9526
AT3G25610			ATPase E1-E2 type family prote...		Lus10034404 [exp]	5.8	0.9555
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10040179 [exp]	6.9	0.9424
AT1G45063			copper ion binding;electron ca...		Lus10038098 [exp]	12.0	0.9406
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015519 [exp]	13.7	0.9393
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10033366 [exp]	15.5	0.9431
AT5G10530			Concanavalin A-like lectin pro...		Lus10020456 [exp]	19.4	0.9548
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10026742 [exp]	19.8	0.9410
AT5G52430			hydroxyproline-rich glycoprote...		Lus10024642 [exp]	21.0	0.9464

Compare expression of checked genes

Lus10035929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.