Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49180 56 / 3e-09 RID3 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025732 [exp] 377 / 2e-132 AT3G49180 130 / 7e-34 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Lus10013988 [exp] 73 / 8e-15 AT3G49180 471 / 4e-160 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G384200 [exp] 174 / 1e-52 AT3G49180 125 / 7e-32 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G027200 [exp] 66 / 1e-12 AT3G49180 503 / 2e-177 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G093300 [exp] 59 / 5e-10 AT3G49180 226 / 8e-69 ROOT INITIATION DEFECTIVE 3, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035930 pacid=23141094 polypeptide=Lus10035930 locus=Lus10035930.g ID=Lus10035930.BGIv1.0 annot-version=v1.0 ATGGACTCCACTTGTAAGCTGTGGAGCCTCCTGGAAGGAACCAATCTGAGGACGGTGGTATTCCCCTGTCCAATTTTAGGGATCGCATTGGACCCATCGG AGACTGATTTCTACGCTGCCGGTTCCGATGGTGTGGTTTACAAGGGAGTTCTGAAACATGGAAACAGGAAACAAGCAGCAGCAGCAGCTAGGGAATTGGT TGTTGCATTGTCTGGGAAACACAATGCTGCAATCGTTTCGATTGCTCAGGTGAATGGTGGGAAGAGCTTCGTATCAGCGGCGGAAGACGGGAGTGTTCAT GTGAGGGAGGTTGAGAGTGGAGAAGTGAGCATGGTTATGGGGAATAATAAGCTGGAGAGCATCAGTGAGATGGTGGTTACCAAGAGGCGGCGGCAGCAGC ATATGGGTTTCAGTCAGTCATGTCAAGGTGAAAGCTCTTCTTCTTCTTCGTCTTCTAAGTTGCCTGGGAAAGAGCAATGTACATTGGGGAAAGAAACAAG GGATAATGAGCTTGAGAAAGCTGGGAAGGAGGATTTGAACAATTCAATTGAAATGCTGGAGTCTGCTATTGATCTTTATGGGACACTTGTGGACCTCATT CTCAAGGAAGCCAAGAGAGGTACAACAACAACCACCAACAGCAATTGCAGAAAGCGCAAGGCTTGA
AA sequence Show only first row Show all	>Lus10035930 pacid=23141094 polypeptide=Lus10035930 locus=Lus10035930.g ID=Lus10035930.BGIv1.0 annot-version=v1.0 MDSTCKLWSLLEGTNLRTVVFPCPILGIALDPSETDFYAAGSDGVVYKGVLKHGNRKQAAAAARELVVALSGKHNAAIVSIAQVNGGKSFVSAAEDGSVH VREVESGEVSMVMGNNKLESISEMVVTKRRRQQHMGFSQSCQGESSSSSSSSKLPGKEQCTLGKETRDNELEKAGKEDLNNSIEMLESAIDLYGTLVDLI LKEAKRGTTTTTNSNCRKRKA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10035930 [exp]	0	1
AT3G54070			Ankyrin repeat family protein ...		Lus10038357 [exp]	10.5	0.8235
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10026653 [exp]	11.6	0.8156
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030086 [exp]	13.0	0.7227
					Lus10007802 [exp]	17.7	0.8129
AT1G49170			Protein of unknown function (D...		Lus10042819 [exp]	22.0	0.7820
					Lus10004778 [exp]	23.1	0.8082
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10021642 [exp]	23.7	0.6673
					Lus10037007 [exp]	24.4	0.7340
					Lus10026392 [exp]	25.4	0.7350
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032037 [exp]	26.2	0.8104

Compare expression of checked genes

Lus10035930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.