Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05200 86 / 7e-20 ATL6 RING/U-box superfamily protein (.1) AT1G49210 81 / 4e-19 RING/U-box superfamily protein (.1) AT1G72200 82 / 2e-18 RING/U-box superfamily protein (.1) AT4G40070 81 / 3e-18 RING/U-box superfamily protein (.1) AT1G49220 79 / 4e-18 RING/U-box superfamily protein (.1) AT5G27420 78 / 3e-17 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1) AT3G18773 76 / 3e-17 RING/U-box superfamily protein (.1) AT1G49200 76 / 3e-17 RING/U-box superfamily protein (.1) AT1G22500 77 / 1e-16 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT4G09110 76 / 2e-16 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000333 [exp] 89 / 7e-21 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10004460 [exp] 87 / 3e-20 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10031515 [exp] 85 / 1e-19 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10015167 [exp] 84 / 3e-19 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1) Lus10029794 [exp] 82 / 2e-18 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1) Lus10036466 [exp] 80 / 9e-18 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10005814 [exp] 78 / 9e-18 AT1G49230 215 / 1e-70 RING/U-box superfamily protein (.1) Lus10041134 [exp] 80 / 1e-17 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10005817 [exp] 78 / 1e-17 AT1G49230 207 / 2e-67 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G025800 [exp] 87 / 2e-20 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 85 / 1e-19 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.010G243500 [exp] 77 / 4e-18 AT5G06490 113 / 6e-32 RING/U-box superfamily protein (.1) Potri.010G243200 [exp] 77 / 4e-18 AT5G06490 138 / 2e-41 RING/U-box superfamily protein (.1) Potri.008G019000 [exp] 77 / 6e-18 AT5G06490 131 / 8e-39 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 80 / 1e-17 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.001G212101 [exp] 76 / 7e-17 AT2G27940 96 / 2e-23 RING/U-box superfamily protein (.1) Potri.019G010600 [exp] 75 / 8e-17 AT1G49230 158 / 1e-48 RING/U-box superfamily protein (.1) Potri.016G067900 [exp] 74 / 1e-16 AT2G35910 129 / 7e-38 RING/U-box superfamily protein (.1) Potri.001G309700 [exp] 74 / 2e-16 AT1G49230 196 / 2e-63 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10035931 pacid=23141048 polypeptide=Lus10035931 locus=Lus10035931.g ID=Lus10035931.BGIv1.0 annot-version=v1.0 ATGAAATCACTGCCGGACGACAGCCACGGCCGTCCCTTGTCCGGCGCCGAAAAGCAGCCGTTGTTTGGAAACGCATTAGCAATTATCATATTGGCCTTCT TCTTTTTAAGACTCTTGTCCATATTCCTCCGAGTCCGCCGCCAGCCATTTCCTTATTATATCGCCTTCCTCGCACTCTTCTTGCACGAGCGCTGGAATCG TCATGACGACGATCATGGTGATTATTATTATTACTATGATCATCAGCAGCAGCAGGAAAACCAACAAGGGGTGGAACCCTCTGTGATGGAAACATTCCCG GTGCTCAGTTACTCCGACGTCAGGGAACTGATCAGGAACAGAATGTTGAGGGAAACGGCGGGATGTGCCATCTGCTTGAGCGATTACATTCAAGGAGAGA GACTTTTGCTGCGGCTGCTGCCTAAATGCGACCATGTTTTCCACCTCAAGTGTATAGATAGGTGGTTGACTTTCCACCTCACGTGCCCGGTTTGTCGGGC CGTTTTGACGGCGGATTCCGATGACGACGATGACAAGCTTCATTTATAG
AA sequence Show only first row Show all	>Lus10035931 pacid=23141048 polypeptide=Lus10035931 locus=Lus10035931.g ID=Lus10035931.BGIv1.0 annot-version=v1.0 MKSLPDDSHGRPLSGAEKQPLFGNALAIIILAFFFLRLLSIFLRVRRQPFPYYIAFLALFLHERWNRHDDDHGDYYYYYDHQQQQENQQGVEPSVMETFP VLSYSDVRELIRNRMLRETAGCAICLSDYIQGERLLLRLLPKCDHVFHLKCIDRWLTFHLTCPVCRAVLTADSDDDDDKLHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G40070			RING/U-box superfamily protein...		Lus10035931 [exp]	0	1
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10018624 [exp]	7.3	0.9417
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10035169 [exp]	10.1	0.9395
AT4G15733		SCRL11	SCR-like 11 (.1)		Lus10029762 [exp]	12.1	0.8936
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	13.3	0.9369
AT1G02335		GL22	germin-like protein subfamily ...		Lus10020632 [exp]	15.2	0.9341
					Lus10038463 [exp]	17.3	0.9328
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	19.0	0.9315
AT1G59970			Matrixin family protein (.1)		Lus10032175 [exp]	19.4	0.7316
AT1G05020			ENTH/ANTH/VHS superfamily prot...		Lus10035340 [exp]	19.8	0.8307
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10008278 [exp]	19.9	0.7915

Compare expression of checked genes

Lus10035931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.