Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24430 223 / 4e-68 HXXXD-type acyl-transferase family protein (.1) AT3G26040 222 / 2e-67 HXXXD-type acyl-transferase family protein (.1) AT4G15390 211 / 2e-63 HXXXD-type acyl-transferase family protein (.1) AT5G47950 206 / 1e-61 HXXXD-type acyl-transferase family protein (.1) AT3G30280 198 / 3e-58 HXXXD-type acyl-transferase family protein (.1) AT1G24420 179 / 3e-51 HXXXD-type acyl-transferase family protein (.1) AT5G23970 162 / 4e-45 HXXXD-type acyl-transferase family protein (.1) AT5G47980 152 / 5e-41 HXXXD-type acyl-transferase family protein (.1) AT4G15400 149 / 4e-40 HXXXD-type acyl-transferase family protein (.1) AT3G50270 105 / 1e-24 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025730 [exp] 444 / 2e-156 AT4G15390 123 / 2e-32 HXXXD-type acyl-transferase family protein (.1) Lus10017925 [exp] 332 / 1e-109 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1) Lus10025729 [exp] 283 / 4e-95 AT1G24430 91 / 5e-22 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 232 / 3e-71 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 224 / 3e-68 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 205 / 3e-59 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 193 / 2e-56 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10025522 [exp] 194 / 3e-56 AT3G26040 236 / 9e-73 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 186 / 6e-54 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010300 [exp] 323 / 9e-107 AT3G26040 294 / 2e-95 HXXXD-type acyl-transferase family protein (.1) Potri.006G010200 [exp] 285 / 2e-92 AT3G26040 247 / 9e-78 HXXXD-type acyl-transferase family protein (.1) Potri.017G010600 [exp] 267 / 7e-85 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Potri.007G139400 [exp] 248 / 6e-78 AT3G26040 252 / 7e-80 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 248 / 2e-77 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 237 / 3e-73 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 234 / 3e-72 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 228 / 1e-69 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.006G036100 [exp] 214 / 2e-64 AT3G26040 250 / 2e-78 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 213 / 5e-64 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10035932 pacid=23141210 polypeptide=Lus10035932 locus=Lus10035932.g ID=Lus10035932.BGIv1.0 annot-version=v1.0 ATGGCTTTAATCGTGGATATCGTTTCTGAAGAAACCATCCGGCCGTCATCGCCCGCACCTCCAAATTCGAGAATCCACAATCTTTCATGTATGGATCAAC TCTCCCCTCCTCGATACATGCCCGTCCTCTATTCCTACGTACCGGAACAACCTGCCTCCCAAAACGACGTCCTCGACAAGCTCAAATCCTCCCTCTCAGC CGTTCTCACCCATTATTACCCCTTCGCCGGGCGGTACCACCACGACGGCGTATCAATCGACTGCAGCGGTGATGGCGTCCCTTTCGTCGTATCCCACGTT GCTGCCGACACGCTGCCGTCACTAGAAGCACCTGACGAGGCCCGCTTGGTACAGCTACTCCCCTGTCGTCCTCAACACGAAAACAGAGATCCCGCCGACG GCAAATTACTGTTCCTAGCCGTCAGAGTTAACTTTTTCGCATGTGGCGGGATCGCAATCGGTATATGTGCGTGGCACCGAATTGCTGACGCGTCGTCCCT CGCTTGCTTCGCCCAATGTTGGGCCGCCATCTGTCGCGGGGACCCTGCCGTCTACAAGGTCCTTCCGGGAGCTGTCGTGGACTACACCTCCTTCTTCCCG TCGCAAGACCTCCGTTACTTAACAGCTGCGCCGACGTCATCCGACGTCAGTACCATCCACCACGTTGATGCTGAGAGTACGGTCGTGGTCAAACGGTTTG TTTTCCCTGCCGAAAAGATTGCGTTACTCAGGGAGAAAATCGGGCGCAACAACGACGAAACGATTCGCCGCCAGCCGACTCGGGTTGAGGCCATCTCGTC TCTGGTTTGGGCAGCAACCATTCGATTGGCTCAGGAGAAGAAGAAGGAAAAGGGGATTGTTATTAATCAAGGGTTTCACTCGGCGGTGATGGTGGTGAAT TTACGGACGAGGACAAGCCCGCCGCTGCCGGCAGTTTGCATGGGGAATATCATCCAGATGACAGAGACGATTAAGTGGCCGATTGAGACAGAGGTGACCG AAGAGAACATGAAAGATTTGGCCGGGAAGTTGGGAGGTGCGGTGCGAACCATTAATAACGAGTATTTGGATAGGCTTCACAAGAATAACAAAGCGGAGGG TTACCTACGTCTGGTGAAATCGTTCGAGGAAGAGTACGAGAAGGATGATTTCATAATGATAAGTAGCTCTTGTAGGTATCCTATCTATGGAGTGGATTTC GGGTGGGGGAAGCCTACTTCTGTTCATGGGTTTTCAGGAAGTAATAAGATGGTGGTGCTGTTGGATGCTAAAGACGGAGAGGGGATCGAGGCTTGGGTTA CGTTGGATAAGGATGACATGTCCAAATTTGAGAAGGATCCCTTCCTTCTTTGTTATGCTAGCTAG
AA sequence Show only first row Show all	>Lus10035932 pacid=23141210 polypeptide=Lus10035932 locus=Lus10035932.g ID=Lus10035932.BGIv1.0 annot-version=v1.0 MALIVDIVSEETIRPSSPAPPNSRIHNLSCMDQLSPPRYMPVLYSYVPEQPASQNDVLDKLKSSLSAVLTHYYPFAGRYHHDGVSIDCSGDGVPFVVSHV AADTLPSLEAPDEARLVQLLPCRPQHENRDPADGKLLFLAVRVNFFACGGIAIGICAWHRIADASSLACFAQCWAAICRGDPAVYKVLPGAVVDYTSFFP SQDLRYLTAAPTSSDVSTIHHVDAESTVVVKRFVFPAEKIALLREKIGRNNDETIRRQPTRVEAISSLVWAATIRLAQEKKKEKGIVINQGFHSAVMVVN LRTRTSPPLPAVCMGNIIQMTETIKWPIETEVTEENMKDLAGKLGGAVRTINNEYLDRLHKNNKAEGYLRLVKSFEEEYEKDDFIMISSSCRYPIYGVDF GWGKPTSVHGFSGSNKMVVLLDAKDGEGIEAWVTLDKDDMSKFEKDPFLLCYAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10035932 [exp]	0	1
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	2.2	0.9648
AT1G63940		MDAR6	monodehydroascorbate reductase...		Lus10028763 [exp]	3.5	0.9607
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10043240 [exp]	4.9	0.9581
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	5.5	0.9516
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10016144 [exp]	6.9	0.9252
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10011430 [exp]	9.8	0.9593
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	10.9	0.9545
AT1G02460			Pectin lyase-like superfamily ...		Lus10038059 [exp]	12.3	0.9439
AT3G19990			unknown protein		Lus10028680 [exp]	12.4	0.9569
AT5G62130			Per1-like family protein (.1.2...		Lus10031658 [exp]	13.1	0.9205

Compare expression of checked genes

Lus10035932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.