Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22475 259 / 2e-84 GEM GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) AT1G28200 224 / 3e-71 FIP1 FH interacting protein 1 (.1) AT4G40100 181 / 7e-55 GRAM domain family protein (.1) AT5G13200 154 / 6e-44 GRAM domain family protein (.1) AT4G01600 134 / 9e-37 GRAM domain family protein (.1.2) AT5G23370 121 / 4e-32 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23350 118 / 2e-30 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G08350 115 / 5e-30 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23360 114 / 2e-29 GRAM domain-containing protein / ABA-responsive protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025728 [exp] 567 / 0 AT2G22475 304 / 4e-103 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10040539 [exp] 244 / 9e-79 AT1G28200 338 / 6e-118 FH interacting protein 1 (.1) Lus10000640 [exp] 239 / 6e-77 AT1G28200 333 / 5e-116 FH interacting protein 1 (.1) Lus10010279 [exp] 167 / 2e-49 AT2G22475 196 / 3e-62 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10031986 [exp] 155 / 3e-44 AT5G13200 302 / 3e-103 GRAM domain family protein (.1) Lus10035154 [exp] 152 / 4e-43 AT5G13200 308 / 9e-106 GRAM domain family protein (.1) Lus10017372 [exp] 129 / 6e-35 AT5G08350 238 / 2e-79 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010166 [exp] 126 / 9e-34 AT5G08350 233 / 1e-77 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010167 [exp] 122 / 1e-32 AT5G08350 247 / 4e-83 GRAM domain-containing protein / ABA-responsive protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G159100 [exp] 246 / 2e-79 AT1G28200 295 / 2e-100 FH interacting protein 1 (.1) Potri.002G102800 [exp] 243 / 4e-78 AT1G28200 325 / 3e-112 FH interacting protein 1 (.1) Potri.002G184100 [exp] 181 / 3e-55 AT1G28200 219 / 7e-72 FH interacting protein 1 (.1) Potri.014G109700 [exp] 171 / 3e-51 AT1G28200 221 / 1e-72 FH interacting protein 1 (.1) Potri.003G165400 [exp] 163 / 4e-47 AT5G13200 350 / 6e-122 GRAM domain family protein (.1) Potri.003G165700 [exp] 157 / 7e-45 AT5G13200 326 / 1e-112 GRAM domain family protein (.1) Potri.003G165500 [exp] 154 / 6e-44 AT5G13200 328 / 3e-113 GRAM domain family protein (.1) Potri.003G165600 [exp] 153 / 2e-43 AT5G13200 323 / 1e-111 GRAM domain family protein (.1) Potri.001G323300 [exp] 149 / 9e-42 AT5G13200 290 / 2e-98 GRAM domain family protein (.1) Potri.007G075700 [exp] 127 / 3e-34 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF02893 [flax] [poplar] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Lus10035933 pacid=23141115 polypeptide=Lus10035933 locus=Lus10035933.g ID=Lus10035933.BGIv1.0 annot-version=v1.0 ATGGACCAACGATTGCCGAAGTCGGAAACAGAGCAAAGTAAAACGGATTCCCCAGCGCTGCTCGATCCGAGATCCGACGTGGACGGAAAAATTGGAGAGA ATCGTCGTAACGAGCAGAAGGGAGACTCTGGCAATAAAGGCGGTATTACTTCGGGATCGGGGAATTCGCAGGCCTCCGAAGAAGCTCACGTTGAAGAATT GCAAGCGCCCTTTCGAGATGGATCGGGGAGGAAATCGGTTCGTTGGAGTCCTGACTTGGTGACTGATTCACGAGCTTCAAACGGGAATGTTAGCAATGAC GGATCGAATCCTTACATCTCGTCTTCTCCTGCTGGACCATCAAATTCTGTTTCAATCAAAGGCAATTACAATGCGTTGAATACGTCTCGTCATTTTTATT GGTTTACAACTCTACAATGGTCTTTCATTTCTGATTTAAGTCTATGGTTTGTTGTTGGCTCAGAGCGGATTGGAAATGTGCGGGAATTCCTGGGAATGTT TGGGAGGAGAGTTGGAGAAGCTACGAAGAAGGCTGAGGATTTTGCGGGCAACACATGGCAGCACTGTGAGTCGGCGATCTTTGTTTGTGATATCTTTCTT GTTTGTCATGCACAATCAGGGTCTCATCGTATGCAAAATGAAGCTTATGGAATCGTAATTGTAGCTCTGAATCGCCTTTACATCGTCGGATATGCTATGA AATGGGCCAACATGAAAACATCCCCCAGTTTTGCCGATGCTGCACTCGGAAGACTTGCTCAAGGATCAAAGGTGTTGGCAGAGGGAGGTTATGAGAAAAT CTTCAGGCAAACATTTGAAACAGTTCCAGAGGAGGTGTTGCAAGATTCATTTGCTTGTTACCTATCAACATCAGCTGGTCCAGTTATGGGAGTTCTGTAT GTGTCCACAGCTAAGCTGGCATACTCTAGTGACAGCCCTCTTTCATATAAAGCAGATGGGAAAACAGAGTGGAGCTACTACAAGGTGGTGATACCGTTGC ATCAGCTGAAGGCGGGAAAGCCATCGACAAGCAGGACGAATGCAGCAGAGAAATACGTGCAGGTGATATCAGTGGATAATCATGAATTTTGGTTCATGGG ATTCTTAAACTACAATGCTGCTGTCCAATGCCTAGAGGATGCCGCCATGCATGCCCAGAATTTAGCCTCTACATCATCATCATGA
AA sequence Show only first row Show all	>Lus10035933 pacid=23141115 polypeptide=Lus10035933 locus=Lus10035933.g ID=Lus10035933.BGIv1.0 annot-version=v1.0 MDQRLPKSETEQSKTDSPALLDPRSDVDGKIGENRRNEQKGDSGNKGGITSGSGNSQASEEAHVEELQAPFRDGSGRKSVRWSPDLVTDSRASNGNVSND GSNPYISSSPAGPSNSVSIKGNYNALNTSRHFYWFTTLQWSFISDLSLWFVVGSERIGNVREFLGMFGRRVGEATKKAEDFAGNTWQHCESAIFVCDIFL VCHAQSGSHRMQNEAYGIVIVALNRLYIVGYAMKWANMKTSPSFADAALGRLAQGSKVLAEGGYEKIFRQTFETVPEEVLQDSFACYLSTSAGPVMGVLY VSTAKLAYSSDSPLSYKADGKTEWSYYKVVIPLHQLKAGKPSTSRTNAAEKYVQVISVDNHEFWFMGFLNYNAAVQCLEDAAMHAQNLASTSSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10035933 [exp]	0	1
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Lus10030115 [exp]	3.7	0.8784
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10020283 [exp]	4.2	0.8365
AT3G59480			pfkB-like carbohydrate kinase ...		Lus10020346 [exp]	6.0	0.8568
AT3G02360			6-phosphogluconate dehydrogena...		Lus10003043 [exp]	7.9	0.8608
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10031668 [exp]	9.8	0.8424
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	10.2	0.8422
AT3G49800			BSD domain-containing protein ...		Lus10019271 [exp]	11.8	0.8166
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10017277 [exp]	12.0	0.8090
AT5G10770			Eukaryotic aspartyl protease f...		Lus10042426 [exp]	12.7	0.7598
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Lus10030042 [exp]	13.8	0.7971

Compare expression of checked genes

Lus10035933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.