Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65430 450 / 1e-162 14-3-3KAPPA, GF14KAPPA, GRF8 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) AT5G10450 448 / 6e-162 14-3-3lambda, AFT1, GF14LAMBDA, GRF6 14-3-3 PROTEIN G-BOX FACTOR14 LAMBDA, G-box regulating factor 6 (.1.2.3.4) AT4G09000 394 / 2e-140 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT1G78300 391 / 3e-139 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT1G35160 390 / 7e-139 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT3G02520 385 / 9e-137 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT5G38480 380 / 4e-135 RCI1, GRF3 general regulatory factor 3 (.1.2) AT5G16050 369 / 4e-130 GF14UPSILON, GRF5 general regulatory factor 5 (.1) AT1G26480 328 / 4e-114 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT2G42590 325 / 5e-113 GENERALREGULATORYFACTOR9, GF14MU, GRF9 general regulatory factor 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025727 [exp] 509 / 0 AT5G65430 454 / 3e-164 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10040534 [exp] 436 / 3e-156 AT5G65430 439 / 1e-157 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10014899 [exp] 432 / 3e-155 AT5G65430 438 / 2e-157 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10036481 [exp] 387 / 1e-137 AT1G78300 481 / 1e-174 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10033545 [exp] 387 / 3e-137 AT3G02520 470 / 4e-170 general regulatory factor 7 (.1) Lus10020940 [exp] 386 / 3e-137 AT1G78300 483 / 2e-175 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10008715 [exp] 386 / 7e-137 AT1G78300 459 / 2e-165 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10017584 [exp] 384 / 2e-136 AT3G02520 471 / 1e-170 general regulatory factor 7 (.1) Lus10010349 [exp] 370 / 1e-130 AT1G78300 454 / 5e-164 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G157700 [exp] 442 / 1e-159 AT5G65430 427 / 1e-153 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Potri.002G103800 [exp] 436 / 8e-157 AT5G65430 429 / 4e-154 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Potri.004G101700 [exp] 389 / 2e-138 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1) Potri.002G099800 [exp] 389 / 4e-138 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.005G162400 [exp] 386 / 3e-137 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.017G113300 [exp] 384 / 2e-136 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1) Potri.011G110900 [exp] 335 / 8e-117 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.001G392200 [exp] 330 / 3e-115 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.002G097500 [exp] 329 / 9e-115 AT1G26480 419 / 4e-150 general regulatory factor 12 (.1) Potri.005G164500 [exp] 328 / 2e-114 AT1G34760 417 / 3e-149 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [flax] [poplar] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Lus10035934 pacid=23141225 polypeptide=Lus10035934 locus=Lus10035934.g ID=Lus10035934.BGIv1.0 annot-version=v1.0 ATGGCGACGTTGCCGGCTTCTCTAACCAGGGATCAGTGCGTCTACTTGGCGAAGCTAGCTGAGCAAGCAGAGCGCTACGAGGAGATGGTGAGTTTCATGG AGAAGCTCGTCACCTCCTCCACACCCGCGTCTGAGCTCACTATTGAAGAGCGTAATCTTCTCTCCGTAGCATACAAGAACGTCATCGGCGCCCGTCGTGC CGCCTGGAGGATCGTGTCGTCGATCGAGCAGAAAGAGGAAGGGAGGAAGAACGATGAGCACGCTCTACTTGTTAAGGAGTACAGATCCAAAGTCGAAACC GAGTTGTCTGCCGTTTGTGCCGGTATTTTGACTATCCTCGACTCCAATTTGATTCCGTCCGCCGTCGGCAGCGAGTCCAAGGTGTTTTACTTGAAGATGA AGGGGGATTATCATCGATACTTGGCCGAGTTCAAAATTGGAGATGAGAGGAAAACTGCTGCTGAGGATACTATGCTGGCTTACAAGGCTGCTCAGGACAT TGCGGTGGCTGAACTTGCTCCAACTCACCCTATAAGGTTAGGGTTGGCACTCAACTTCTCCGTGTTTTACTACGAGATCCTCAACTCCTCAGAGAAAGCT TGTACCATGGCGAAACAGGCTTTTGAGGAAGCGATTGCAGAACTGGATACGTTGGGTGAGGAATCCTACAAGGACAGCACTCTCATTATGCAACTACTGC GAGATAACCTCACTCTGTGGACTTCTGATATGCAGGAGCAGATGGATGAGGCATAG
AA sequence Show only first row Show all	>Lus10035934 pacid=23141225 polypeptide=Lus10035934 locus=Lus10035934.g ID=Lus10035934.BGIv1.0 annot-version=v1.0 MATLPASLTRDQCVYLAKLAEQAERYEEMVSFMEKLVTSSTPASELTIEERNLLSVAYKNVIGARRAAWRIVSSIEQKEEGRKNDEHALLVKEYRSKVET ELSAVCAGILTILDSNLIPSAVGSESKVFYLKMKGDYHRYLAEFKIGDERKTAAEDTMLAYKAAQDIAVAELAPTHPIRLGLALNFSVFYYEILNSSEKA CTMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQEQMDEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10035934 [exp]	0	1
AT3G59350			Protein kinase superfamily pro...		Lus10026706 [exp]	1.0	0.9216
AT2G19760		PRF1, PFN1	profilin 1 (.1)		Lus10011138 [exp]	1.7	0.9054
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10010999 [exp]	2.0	0.9056
AT2G41150			unknown protein		Lus10022403 [exp]	2.6	0.8872
AT2G38610			RNA-binding KH domain-containi...		Lus10034443 [exp]	3.5	0.9027
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10011990 [exp]	4.0	0.8830
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10017650 [exp]	4.5	0.8777
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10003077 [exp]	6.0	0.8815
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10025727 [exp]	8.5	0.8512
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Lus10033055 [exp]	8.8	0.8612

Compare expression of checked genes

Lus10035934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.