Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48610 754 / 0 NPC6 non-specific phospholipase C6 (.1) AT1G07230 588 / 0 NPC1 non-specific phospholipase C1 (.1) AT2G26870 578 / 0 NPC2 non-specific phospholipase C2 (.1) AT3G03520 544 / 0 NPC3 non-specific phospholipase C3 (.1) AT3G03530 522 / 0 NPC4 non-specific phospholipase C4 (.1) AT3G03540 515 / 8e-180 NPC5 non-specific phospholipase C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025726 [exp] 981 / 0 AT3G48610 774 / 0.0 non-specific phospholipase C6 (.1) Lus10040678 [exp] 598 / 0 AT1G07230 809 / 0.0 non-specific phospholipase C1 (.1) Lus10005860 [exp] 579 / 0 AT1G07230 810 / 0.0 non-specific phospholipase C1 (.1) Lus10009153 [exp] 547 / 0 AT3G03530 694 / 0.0 non-specific phospholipase C4 (.1) Lus10028492 [exp] 544 / 0 AT3G03530 689 / 0.0 non-specific phospholipase C4 (.1) Lus10036038 [exp] 332 / 3e-111 AT2G26870 423 / 1e-147 non-specific phospholipase C2 (.1) Lus10036039 [exp] 157 / 3e-45 AT2G26870 229 / 4e-73 non-specific phospholipase C2 (.1) Lus10001208 [exp] 150 / 5e-43 AT1G07230 213 / 1e-67 non-specific phospholipase C1 (.1) Lus10001207 [exp] 131 / 2e-36 AT1G07230 146 / 7e-43 non-specific phospholipase C1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G097900 [exp] 798 / 0 AT3G48610 813 / 0.0 non-specific phospholipase C6 (.1) Potri.012G099300 [exp] 795 / 0 AT3G48610 834 / 0.0 non-specific phospholipase C6 (.1) Potri.001G275500 [exp] 588 / 0 AT2G26870 769 / 0.0 non-specific phospholipase C2 (.1) Potri.009G069900 [exp] 584 / 0 AT2G26870 786 / 0.0 non-specific phospholipase C2 (.1) Potri.001G250500 [exp] 579 / 0 AT1G07230 820 / 0.0 non-specific phospholipase C1 (.1) Potri.009G045100 [exp] 578 / 0 AT1G07230 815 / 0.0 non-specific phospholipase C1 (.1) Potri.013G073600 [exp] 555 / 0 AT3G03530 709 / 0.0 non-specific phospholipase C4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0088 [flax] [poplar] Alk_phosphatase PF04185 [flax] [poplar] Phosphoesterase Phosphoesterase family
Representative CDS sequence Show only first row Show all	>Lus10035935 pacid=23141163 polypeptide=Lus10035935 locus=Lus10035935.g ID=Lus10035935.BGIv1.0 annot-version=v1.0 ATGGCGACATTCTCTTGCATCCCACTCTTATTATTTCTGTTACTTTCGACCGACATTTCCTCGGCGGAAAGCCAGAGTCCAATCAAAACCGTAGTAGTTC TGGTGATGGAAAATAGATCCTTCGACCATATGCTTGGGTGGATGAAAAAGACAATCAACCTATCAATCGACGGCGTCACCGGTTCCGAATGCAACCCTCT GACTACCGCCAACGCCACCGGCAACTCCTCAGCTATCTGCTTCACAGACGACGCTGAATTCGTGGATCCGGATCCGGGTCATTCCTTCGAAGAAGTCCTC CAGCAGGTATTCGGGAACAGCTCAATTCCTTCCATGTCTGGATTCGTGGAGCAAGCACTCTCGCTTTCCCCAAATCTATTCAAAACCGTGATGAAAGGTT TCAACCCAGATTCCCTTCCTATCTACTCAACCTTGGTAAAAGAATTCGCGGTATTCGACAGATGGTTCTCTTCAATCCCAGGGCCCACCCAACCAAACCG GTTATTCGTCTACTCCGCCACTTCCCACGGTTCAACCAGCCACGTAGCGAAGCAATTGGCCCTGGGTTACCCACAGAGAACAATCTTCGATTCCCTCCAT GAACAAGGAAAGAGCTTCGGGGTCTACTTCCAGAACATACCAACCACTCTCTTTTTCAGGAATTTGAGGAAATTGAAGTATGTTTGGAATTTCCACGAGT TCGAATTAGGGTTCAAGAGGGACGCGAGGGAAGGGAAGCTCCCTAATTTGGCAGTGATAGAGCCGAGGTACTTTAATGTCCCTGGTTTCTCTGGGAACGA CGACCATCCTTCCCACGACGTTGCAGATGGGCAGAAGCTGGTGAAGCAAGTATACGAGAGCTTGAGAAGCAGCCCGCAGTGGAACGAAACATTGTTGGTG ATTACTTACGATGAACACGGAGGCTTCTTTGACCATGTTACGACACCCTTTGTAGGTGTCCCTAACCCGGATGGGAATACAGGTCCTGCCCCGTTTTTCT TCAATTTTGATCGCCTTGGTGTTCGGGTTCCCACCATCATGGTCTCCCCCTGGATCAACAAAGGCACTGTGATTAGTCGTCCCAGTGGACCTGAGGCAAG CTCGGAATTCGAGCACTCTTCCATTCCAGCAAGCATTAAAAAGATATTCAATCTATCATCCAATTTTCTGACACACAGGGATGCTTGGGCCGGTACCTTT GAAGGTGTAGTTCAACAATTGACATCTCCTAGAACTGATTGCCCTGAAACTTTGCCAGATGTGACTCCGTTAAGAAAGACAGCAGCAGCTAAGGATAATG ATGAAAAAAACAACTTGTCTCAATTTCAGAAGGAGCTGGTTCAGCTAGCAGCTGTTTTGAATGGAGATCACTTGTTGAGCGGTTTCCCTAATGAAATGAG CAAGAACATGAATGTTAAGGAAGCTCACGAATACGTTCAAGGAGCAGTAGCAAGGTTCATCAGAGCAAGCAAAGAGGCGATTAAGTTGGGTGCACATGAA TCTGCCGTTGTTGAAATGAGGTCCTCCCTCACTACTAGATCATCTTTACGCCCCCCTCCCTAG
AA sequence Show only first row Show all	>Lus10035935 pacid=23141163 polypeptide=Lus10035935 locus=Lus10035935.g ID=Lus10035935.BGIv1.0 annot-version=v1.0 MATFSCIPLLLFLLLSTDISSAESQSPIKTVVVLVMENRSFDHMLGWMKKTINLSIDGVTGSECNPLTTANATGNSSAICFTDDAEFVDPDPGHSFEEVL QQVFGNSSIPSMSGFVEQALSLSPNLFKTVMKGFNPDSLPIYSTLVKEFAVFDRWFSSIPGPTQPNRLFVYSATSHGSTSHVAKQLALGYPQRTIFDSLH EQGKSFGVYFQNIPTTLFFRNLRKLKYVWNFHEFELGFKRDAREGKLPNLAVIEPRYFNVPGFSGNDDHPSHDVADGQKLVKQVYESLRSSPQWNETLLV ITYDEHGGFFDHVTTPFVGVPNPDGNTGPAPFFFNFDRLGVRVPTIMVSPWINKGTVISRPSGPEASSEFEHSSIPASIKKIFNLSSNFLTHRDAWAGTF EGVVQQLTSPRTDCPETLPDVTPLRKTAAAKDNDEKNNLSQFQKELVQLAAVLNGDHLLSGFPNEMSKNMNVKEAHEYVQGAVARFIRASKEAIKLGAHE SAVVEMRSSLTTRSSLRPPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10035935 [exp]	0	1
AT4G17060		FIP2	FRIGIDA interacting protein 2 ...		Lus10001004 [exp]	2.0	0.8719
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Lus10008922 [exp]	3.5	0.8765
AT5G65490			unknown protein		Lus10002654 [exp]	4.5	0.8586
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10023533 [exp]	5.0	0.8882
AT3G44610			Protein kinase superfamily pro...		Lus10006272 [exp]	6.5	0.8731
AT5G10730			NAD(P)-binding Rossmann-fold s...		Lus10020108 [exp]	14.7	0.8566
AT3G09350		Fes1A	Fes1A (.1.2.3)		Lus10003961 [exp]	15.0	0.8507
AT5G43390			Uncharacterised conserved prot...		Lus10021875 [exp]	16.0	0.8713
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011590 [exp]	16.7	0.8436
AT4G25390			Protein kinase superfamily pro...		Lus10027393 [exp]	17.3	0.8512

Compare expression of checked genes

Lus10035935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.