Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22500 196 / 1e-61 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT4G24570 188 / 1e-58 DIC2 dicarboxylate carrier 2 (.1) AT5G09470 128 / 2e-35 DIC3 dicarboxylate carrier 3 (.1) AT1G14140 103 / 4e-26 Mitochondrial substrate carrier family protein (.1) AT3G54110 94 / 9e-23 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT5G19760 87 / 6e-20 Mitochondrial substrate carrier family protein (.1) AT5G58970 86 / 1e-19 ATUCP2 uncoupling protein 2 (.1.2) AT4G03115 67 / 5e-13 Mitochondrial substrate carrier family protein (.1) AT3G53940 56 / 4e-09 Mitochondrial substrate carrier family protein (.1) AT1G79900 55 / 1e-08 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025725 [exp] 383 / 4e-136 AT2G22500 310 / 2e-106 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Lus10015897 [exp] 158 / 2e-47 AT4G24570 184 / 2e-56 dicarboxylate carrier 2 (.1) Lus10009270 [exp] 152 / 3e-47 AT2G22500 204 / 8e-67 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Lus10009271 [exp] 128 / 1e-37 AT4G24570 138 / 7e-41 dicarboxylate carrier 2 (.1) Lus10016445 [exp] 91 / 2e-21 AT5G58970 493 / 1e-177 uncoupling protein 2 (.1.2) Lus10027755 [exp] 90 / 4e-21 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10035538 [exp] 89 / 7e-21 AT3G54110 512 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10040709 [exp] 89 / 1e-20 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10007883 [exp] 89 / 4e-20 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G104400 [exp] 198 / 1e-62 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045150 [exp] 198 / 2e-62 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045332 [exp] 198 / 2e-62 AT2G22500 410 / 1e-144 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.007G113000 [exp] 192 / 2e-60 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.005G157300 [exp] 192 / 3e-60 AT2G22500 412 / 2e-145 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G047800 [exp] 184 / 4e-57 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.017G045400 [exp] 184 / 5e-57 AT4G24570 355 / 4e-123 dicarboxylate carrier 2 (.1) Potri.017G045100 [exp] 182 / 4e-56 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045200 [exp] 150 / 1e-45 AT2G22500 286 / 3e-98 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.010G165900 [exp] 97 / 9e-24 AT1G14140 447 / 1e-159 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10035936 pacid=23141113 polypeptide=Lus10035936 locus=Lus10035936.g ID=Lus10035936.BGIv1.0 annot-version=v1.0 ATGGGTTTGAAAGGGTTTTTGGAGGGAGGAGTTGCTTCCGTCGTAGCCGGATGCTCAACCCACCCCATTGATTTGATCAAAGTCCGTATGCAGCTCCAAG GAGAATCACCCTCCCCATCTCTCCGACCAGCCCTCGCATTTCCCAACCACCGTCACTCCATCCACCTCCCTCCCCCGCCGCGGGTGGGACCAATCGCTGT CGCTACCAAAATGTTCCGCCAAGAAGGACTCGCCGCCCTCTTTTCCGGCGTCTCCGCCACCGTCCTCCGCCAGACCCTCTACTCCACCACCAGGATGGGG ATCTACGACATCCTCAAGCACAAGTGGACTGATCCCTCCACCAAAACCATGCCCCTCCAGAAGAAGATAGGCGCCGGCCTATTCGCCGGCGCGATTGGCG CCACTGTGGGGAACCCGGCCGACCTGGCCATGGTGCGGATGGGTGTGCACGACTTGCCGGCGATTGTGGCGGCCGGGTTTGTGGCGGCGGTGGCGTCTAA CCCGGTGGACGTGATAAAGACGAGGGTTATGAATATGAAGGTTGAGCAAGGGAAGGCGGCGCCTTATGCTGGTGCTATGGATTGTGCCATTAAAACGGTG AAAGCGGAGGGTCCTATGGCTCTGTATAAAGGGTTTATCCCCACCATTTCTAGACAGGGTCCTTTCACTGTTGTTCTGTTTGTGACTCTGGAACAGGTCA GGAAGTTGCTCAAGGATTTCTGA
AA sequence Show only first row Show all	>Lus10035936 pacid=23141113 polypeptide=Lus10035936 locus=Lus10035936.g ID=Lus10035936.BGIv1.0 annot-version=v1.0 MGLKGFLEGGVASVVAGCSTHPIDLIKVRMQLQGESPSPSLRPALAFPNHRHSIHLPPPPRVGPIAVATKMFRQEGLAALFSGVSATVLRQTLYSTTRMG IYDILKHKWTDPSTKTMPLQKKIGAGLFAGAIGATVGNPADLAMVRMGVHDLPAIVAAGFVAAVASNPVDVIKTRVMNMKVEQGKAAPYAGAMDCAIKTV KAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKLLKDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10035936 [exp]	0	1
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10028791 [exp]	2.2	0.9030
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10017431 [exp]	2.4	0.8906
AT2G39980			HXXXD-type acyl-transferase fa...		Lus10040222 [exp]	4.6	0.8508
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038282 [exp]	5.3	0.8748
AT1G27040			Major facilitator superfamily ...		Lus10002793 [exp]	6.2	0.8857
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10041159 [exp]	9.2	0.8519
					Lus10040690 [exp]	10.4	0.8513
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Lus10007275 [exp]	10.6	0.8490
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10010530 [exp]	10.8	0.8434
AT5G05340			Peroxidase superfamily protein...		Lus10009933 [exp]	15.5	0.8326

Compare expression of checked genes

Lus10035936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.