Plant FIBer expression Database

Lus10035937 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G38090 313 / 3e-109 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025724
[exp]
410 / 1e-147 AT4G38090 311 / 4e-108 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G010400
[exp]
334 / 1e-117 AT4G38090 316 / 8e-110 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0329 S5 PF01205 UPF0029 Uncharacterized protein family UPF0029
Representative CDS sequence
>Lus10035937 pacid=23141004 polypeptide=Lus10035937 locus=Lus10035937.g ID=Lus10035937.BGIv1.0 annot-version=v1.0
ATGGTAAGCAGCAGCAGCAGAAACGCTGGCGCTTTCACCACGCTGAAAGAGAGAGTCACCTTCGAGAAGGAAATCAAAAAGAGCAAATTCATCGCCATTT
CTGGGCCCGTCTCCAACGAACAGTCCGCCTTCGCCTTCCTCAATCAGGTCAGAGAGCCTCGCGCCACACACAATTGCTGGGCTTACAAGGTAGGGGATCA
ATTCCGGAGCAATGACGACGGCGAACCATCGGGGACAGCTGGGAAGCCAATCCAATCTGCAATTGAATCTTCAGGGATTGATAGAGTAATGGTGGTTGTG
ATCAGGCATTTTGGTGGGATTAAGTTGGGGACTGGAGGATTAGTGAGGGCTTATGGAGGAGTGGCGGCTGAATGCTTGAGGAATGCCCCAACGCAGCTTG
TGAAGTCCAAGGTTCCACTTGGCATCGAGGTCCCCTTCGAGCTCTTGGGGATTCTAAATCATCAGTTACAATCTTTTCAAGTTGCGGACCTTAGACAAGA
TTATGAAACCGGTAAAGATGGTATTGCCATGGTTACTTTCAAGGTTGATTTTGACAAGGCGGAGGAATTGGAGGATGCTGTTAAAAGCAATTGCAGCAGG
GACCTACTGTTTTATAGGTGA
AA sequence
>Lus10035937 pacid=23141004 polypeptide=Lus10035937 locus=Lus10035937.g ID=Lus10035937.BGIv1.0 annot-version=v1.0
MVSSSSRNAGAFTTLKERVTFEKEIKKSKFIAISGPVSNEQSAFAFLNQVREPRATHNCWAYKVGDQFRSNDDGEPSGTAGKPIQSAIESSGIDRVMVVV
IRHFGGIKLGTGGLVRAYGGVAAECLRNAPTQLVKSKVPLGIEVPFELLGILNHQLQSFQVADLRQDYETGKDGIAMVTFKVDFDKAEELEDAVKSNCSR
DLLFYR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G38090 Ribosomal protein S5 domain 2-... Lus10035937
[exp]
0 1
AT1G71950 Proteinase inhibitor, propepti... Lus10038252
[exp]
3.6 0.8700
AT5G39360 EDL2 EID1-like 2 (.1) Lus10025639
[exp]
6.0 0.8563
AT1G02070 unknown protein Lus10009267
[exp]
8.4 0.8493
AT5G08290 YLS8 YELLOW-LEAF-SPECIFIC GENE 8, m... Lus10010188
[exp]
9.8 0.8500
AT1G01230 ORMDL family protein (.1) Lus10005980
[exp]
11.0 0.8435
AT1G07250 UGT71C4 UDP-glucosyl transferase 71C4 ... Lus10039037
[exp]
11.6 0.8305
AT2G17350 unknown protein Lus10013847
[exp]
12.4 0.8351
AT3G55920 Cyclophilin-like peptidyl-prol... Lus10030408
[exp]
12.8 0.8533
AT5G19430 RING/U-box superfamily protein... Lus10009695
[exp]
14.4 0.8103
AT1G03250 unknown protein Lus10012370
[exp]
15.1 0.8450

Lus10035937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.