Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22530 385 / 3e-120 Alkaline-phosphatase-like family protein (.1) AT5G17250 86 / 7e-17 Alkaline-phosphatase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025722 [exp] 938 / 0 AT2G22530 1008 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10005793 [exp] 83 / 4e-16 AT5G17250 1088 / 0.0 Alkaline-phosphatase-like family protein (.1) Lus10006806 [exp] 80 / 5e-15 AT5G17250 1085 / 0.0 Alkaline-phosphatase-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G010600 [exp] 454 / 3e-146 AT2G22530 941 / 0.0 Alkaline-phosphatase-like family protein (.1) Potri.003G059300 [exp] 82 / 7e-16 AT5G17250 1095 / 0.0 Alkaline-phosphatase-like family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035939 pacid=23141249 polypeptide=Lus10035939 locus=Lus10035939.g ID=Lus10035939.BGIv1.0 annot-version=v1.0 ATGCCTCAGCTAACGTGCACTAAACTGACCGTCTTCACTCTAGCTGCGGTATTAATCCAAATCATAGGTCTCTCCATTTTCGTCTACGGTTTCTTCCCCG TCAAACCCGCCCTCTCTGGCGTCAGTGGCCTTGAGAGCTTCTATCCTCCGGGGCATTCTGGCGAGAATGGCAGCGGGATAGACGCTGATTTTCCTCCCCA TCAGATGAAATCTTTATATCAGGAGCTCTCTGGGGTGTCTCCTATGTTTGATCGACTGATTCTCATGGTTATTGATGGCCTTCCAGCAGAATTTGTGCTT GGCAAGGACGGAAAGCCTCCCCGGAGAGATCTGGTGGAAGCTATGCCATATATCCATTCATTGTTATCTACCGGAAGGGCATTTGGGTACCATGCAAAGG CTGCACCTCCAACTGTTACAATGCCTCGATTGAAGGCTATGGTTTCCGGAGCAATAGGTGGATTCTTGGACGTGGCTTTCAATTTTAACACCCAGGCTCT GTTAGATGACAATCTTCTTGGTCAGTTTTTCAAAATTGGCTGGAAAATGGTCATGCTGGGGGATGACACATGGCTTAGGCTATTTCCGGGTTTATTTGCG AGACATGATGGAGTGAACAGTTTTTATTTGGTGGTGAGTGATCATGGTATGACAGAAAGTGGGAATCATGAAGGTTCTTCATATGAAGAAACCGACTCCC TAGCTCTTTTCATTGGTTTTGAAAATGAAATAACTGATCAGGCATCAGTCACTTCTATTCGTCAGTGTTTATATCCGTGGCCTGCTCATAAACCTCAAGT TTTCTGTTACATGCTGGAACAGGTTGACATCACTCCAACACTGGCTCTTCTTTTTAATATCCCGATACCCAAAAACAATGTTGGAATCCTGATATCTGAA ACCTTTGATTCTCGTCCAGACCAAAGGCTGAGAGCTCTGGAGTTGAATTCATGGCAGTTACTGAGACTAGTTCAGGCAGAGTTACCAGCATTCTCATGTG GAGATTCAGAAGTCCTTGACCTGTCTGATCATGTTGGGTCTACAAGTGGAGAATGTGGTGGAAGCATAGAGAGGACCCTTTGTTGCTTATACACAAAAGC TAGAAGTATTAGTAGTTTTTGGGAATCTACGAAGGCTTCCAGGTGCGAGCTCGACAGCGAGAATGGATACAGGTTGGCTGTTGCTGCATATTATAATTTC TTGAATGCTGCCAGTGAGTGGTTGTCGCGCAGAGTAACAGATAAGCCTGTCAGCCTGTTAGCTTCTGGGGTCGTGGCGATGGCTTTGTCCTGTATAATCT TGTTAGCCATCCTAATTTGGATGAAAAGAAAAGTCTGCACCAGGAATCAACCTTGCACACAATATATACCCGAGTTTGGTTTGCATAATGTCTTTGTCCC AAGTGTTGTGCTCATCCTTATATTCAGCATGGGTTCAAGTTCCATGGTAGAGGAAGAACAATATATTTGGCATTTTCTGACAGTGACATCATCCCTGTTA CTACTCCGAAAAGCATTGGGATCGCTTCATGCTGGAAGTGAACGAGTTTCGCTTACATTGAAGCAACAGAATCAAAGACATAGTACTGAAATTTGCTCTA TATTTTTGCTTCTTATTTCTGGGAGAGTATTGAGAGGCTGGCATCAAGGTGGTGTGAACTGGACTCATCTTTCAGACATCTCTAAGTGGCTTGAAAAGTT TGGGAGTGGTAGTATATGGTGGATTCAGCTAGTCTCAGGACTCCTCATGATCAGTTTGGGCTTATTTGCTTTATGTTCTTGTTGGTCTATAGGGAAAGCC AATCATCTTGTTGCATTATGTTTCTCAGTATCTGGACTGTTTGTTCTAGGGAATATCATGAAGCATCAAGGCAATGCTATTGCATCTTCCAGTTATGGTG CTACTACATCAATCCAGATAACCTTTGCAACATTGGGTTTCTCTGCATTGAGCAGCCTATTGGTCATACCATGGCTGATGCCCACTGGTATTTGTTACGA GTCCTCAACATCTTTTTTAAACTTGCAGCAATCATTTCCTATCGGCCTTAAACGTAAGGCTCTGCTGTTGGAATTTAGAGATGCTACACATGTGATTGGG CTAGCATACATATTGTTCTGGTGTCTTCTTCAACTGGTGCTTCAACAGCCAATCAATGCAATGCCTGTCTTTTTGCTTATGTTGCAAGTGTTCGCTTGCA TGTTTTGTAATTCTCAAGGTGAAAGAGACCAGATGGAACTAGTTGAGGTTGCGTCGTTGTACTACATGGGTATGGCTGGACATTTTGCACTAGGGAACAG CAATACTTTAGCCACTATTGATGTTGCTGGAGCGTTCATTGTACGTCCTCTTATCATCCTGGCAGGCATAGTTATATTTTAA
AA sequence Show only first row Show all	>Lus10035939 pacid=23141249 polypeptide=Lus10035939 locus=Lus10035939.g ID=Lus10035939.BGIv1.0 annot-version=v1.0 MPQLTCTKLTVFTLAAVLIQIIGLSIFVYGFFPVKPALSGVSGLESFYPPGHSGENGSGIDADFPPHQMKSLYQELSGVSPMFDRLILMVIDGLPAEFVL GKDGKPPRRDLVEAMPYIHSLLSTGRAFGYHAKAAPPTVTMPRLKAMVSGAIGGFLDVAFNFNTQALLDDNLLGQFFKIGWKMVMLGDDTWLRLFPGLFA RHDGVNSFYLVVSDHGMTESGNHEGSSYEETDSLALFIGFENEITDQASVTSIRQCLYPWPAHKPQVFCYMLEQVDITPTLALLFNIPIPKNNVGILISE TFDSRPDQRLRALELNSWQLLRLVQAELPAFSCGDSEVLDLSDHVGSTSGECGGSIERTLCCLYTKARSISSFWESTKASRCELDSENGYRLAVAAYYNF LNAASEWLSRRVTDKPVSLLASGVVAMALSCIILLAILIWMKRKVCTRNQPCTQYIPEFGLHNVFVPSVVLILIFSMGSSSMVEEEQYIWHFLTVTSSLL LLRKALGSLHAGSERVSLTLKQQNQRHSTEICSIFLLLISGRVLRGWHQGGVNWTHLSDISKWLEKFGSGSIWWIQLVSGLLMISLGLFALCSCWSIGKA NHLVALCFSVSGLFVLGNIMKHQGNAIASSSYGATTSIQITFATLGFSALSSLLVIPWLMPTGICYESSTSFLNLQQSFPIGLKRKALLLEFRDATHVIG LAYILFWCLLQLVLQQPINAMPVFLLMLQVFACMFCNSQGERDQMELVEVASLYYMGMAGHFALGNSNTLATIDVAGAFIVRPLIILAGIVIF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22530			Alkaline-phosphatase-like fami...		Lus10035939 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10016337 [exp]	1.4	0.7722
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10000831 [exp]	5.0	0.7046
AT1G04900			Protein of unknown function (D...		Lus10007135 [exp]	6.5	0.7273
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Lus10041662 [exp]	9.8	0.7177
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10017785 [exp]	12.1	0.7330
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10039056 [exp]	12.5	0.6982
AT1G71140			MATE efflux family protein (.1...		Lus10000619 [exp]	13.7	0.6939
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10042983 [exp]	22.7	0.6758
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10004304 [exp]	29.9	0.6942
AT5G06810			Mitochondrial transcription te...		Lus10018548 [exp]	30.6	0.6346

Compare expression of checked genes

Lus10035939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.