Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22540 288 / 2e-97 MADS AGL22, SVP SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) AT4G24540 229 / 3e-74 MADS AGL24 AGAMOUS-like 24 (.1) AT3G57230 142 / 2e-40 MADS AGL16 AGAMOUS-like 16 (.1.2) AT4G37940 135 / 7e-38 MADS AGL21 AGAMOUS-like 21 (.1) AT1G26310 131 / 4e-36 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT2G22630 129 / 9e-36 MADS AGL17 AGAMOUS-like 17 (.1) AT3G58780 129 / 4e-35 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G14210 128 / 4e-35 MADS AGL44, ANR1 ARABIDOPSIS NITRATE REGULATED 1, AGAMOUS-like 44 (.1) AT3G57390 129 / 5e-35 MADS AGL18 AGAMOUS-like 18 (.1.2) AT1G69120 128 / 7e-35 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025719 [exp] 336 / 1e-116 AT2G22540 286 / 4e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Lus10005325 [exp] 137 / 3e-38 AT5G13790 249 / 7e-83 AGAMOUS-like 15 (.1) Lus10007100 [exp] 135 / 7e-38 AT3G57230 226 / 4e-75 AGAMOUS-like 16 (.1.2) Lus10039580 [exp] 135 / 2e-37 AT5G13790 246 / 2e-81 AGAMOUS-like 15 (.1) Lus10017871 [exp] 126 / 7e-35 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10006715 [exp] 127 / 1e-34 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10034662 [exp] 125 / 6e-34 AT5G60910 284 / 3e-97 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10007983 [exp] 124 / 2e-33 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10021140 [exp] 124 / 2e-33 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G010800 [exp] 307 / 7e-105 AT2G22540 329 / 3e-115 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.002G105600 [exp] 246 / 7e-81 AT2G22540 288 / 3e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.005G155300 [exp] 236 / 4e-77 AT2G22540 234 / 8e-78 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G115200 [exp] 215 / 6e-69 AT2G22540 189 / 3e-60 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G115100 [exp] 213 / 7e-68 AT2G22540 186 / 1e-58 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.017G044200 [exp] 210 / 7e-67 AT2G22540 206 / 9e-67 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.017G044500 [exp] 207 / 6e-66 AT2G22540 201 / 4e-65 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.007G115000 [exp] 207 / 2e-65 AT2G22540 181 / 9e-57 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.009G079000 [exp] 144 / 3e-41 AT4G37940 293 / 3e-101 AGAMOUS-like 21 (.1) Potri.005G150501 [exp] 145 / 5e-41 AT3G57230 322 / 8e-112 AGAMOUS-like 16 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10035942 pacid=23141024 polypeptide=Lus10035942 locus=Lus10035942.g ID=Lus10035942.BGIv1.0 annot-version=v1.0 ATGGCTCGGGAGAAGATACAGATAAAGAAGATAGACAATGCGACGGCGAGGCAGGTGACATTCTCAAAGAGGAGGAGAGGCCTCTTCAAGAAAGCCGAGG AGCTTTCTGTTCTCTGCGATGCTGACGTGGCTCTCATCATCTTCTCCTCCACCGGCAAGCTCTTTGAGTTCTCCAGCTCCAGCATGAAAGAAATACTGGA GAGACACAATCTGCACTCCAAGAATCTTGAGAAATTGGAACAGCCATCCCTGGAGTTGCAGCTGGTAGAGAACAGTAACTTCACAAGGTTGAGTAAGGAA GTTGCCGAGAAAACCCGTCAACTCAGGCAAATGAGGGGAGAAGAACTGCAGGGTCTGAGCATTGAAGAACTCCAACATCTGGAGAAGTCTCTTGAAAGTG GGTTGAACCGCGTCATCCAAAAGAAGAGTGATAAAATCACCACCGAGATCACTCACCTTCAAACTAAGGGAATGCAGTTGATGCAAGAAAATCAGCGCCT AAGAGATCAAGTGGAAGAAATGAGCAACGGTGGGATCAGCAGAGTTGTTACGGAAGTGGCGGAGGCGATAACCATAGATTCAGAGAATGTGGAATTAGGT GGCCAGTCCTCTGAATCCATCACCAATGGCAGCATCAGCAGCAATAATAATAATAATAATAATGGTGCCACTCAAAGTCACGATTACGAAAGTTCCGATA CTTCCCTCAAACTCGGGTGTCCGGTCCGGTGTTGTCTGATAGGGATCTTCAGCACAGGAACATTGCTGGGCTTGTTTGAGTGGATCAAGCTGTTCCGGCC CAATGTTATTGAGTTCACAATCCAACTGATTACTTGGACATTGCATTTCCAACACTCCATTTTATCCATACCCATCAACTTACTTGCCCCTCGAAGAAGT ATTCAACGAGATGGATCGTCTATCTCTGATTTCCAAGAGGTCCACGTATGGAGTCGTTCTTCACGACACTCCCTTCTTCTGCTCACTGTTAACAGGTTCC TAAGCGAGAGCAGTTCTCAAAGCTACAAGAATGGCAACGACAAGTGCTGA
AA sequence Show only first row Show all	>Lus10035942 pacid=23141024 polypeptide=Lus10035942 locus=Lus10035942.g ID=Lus10035942.BGIv1.0 annot-version=v1.0 MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFSSSSMKEILERHNLHSKNLEKLEQPSLELQLVENSNFTRLSKE VAEKTRQLRQMRGEELQGLSIEELQHLEKSLESGLNRVIQKKSDKITTEITHLQTKGMQLMQENQRLRDQVEEMSNGGISRVVTEVAEAITIDSENVELG GQSSESITNGSISSNNNNNNNGATQSHDYESSDTSLKLGCPVRCCLIGIFSTGTLLGLFEWIKLFRPNVIEFTIQLITWTLHFQHSILSIPINLLAPRRS IQRDGSSISDFQEVHVWSRSSRHSLLLLTVNRFLSESSSQSYKNGNDKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10035942 [exp]	0	1
AT4G03090			sequence-specific DNA binding;...		Lus10006937 [exp]	1.0	0.9077
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10013219 [exp]	2.8	0.8870
AT3G49410			Transcription factor IIIC, sub...		Lus10042709 [exp]	3.9	0.8634
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Lus10025719 [exp]	4.6	0.8726
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10014939 [exp]	4.9	0.8890
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	5.0	0.8821
AT3G49410			Transcription factor IIIC, sub...		Lus10029671 [exp]	5.3	0.8432
AT1G67080		ABA4	abscisic acid (aba)-deficient ...		Lus10009168 [exp]	6.0	0.8582
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	7.2	0.8946
AT5G01260			Carbohydrate-binding-like fold...		Lus10004826 [exp]	8.5	0.8809

Compare expression of checked genes

Lus10035942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.