Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38070 674 / 0 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025718 [exp] 1716 / 0 AT4G38070 669 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G415800 [exp] 721 / 0 AT4G38070 587 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G131500 [exp] 691 / 0 AT4G38070 580 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G076400 [exp] 89 / 5e-21 AT4G38070 82 / 6e-20 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035943 pacid=23141255 polypeptide=Lus10035943 locus=Lus10035943.g ID=Lus10035943.BGIv1.0 annot-version=v1.0 ATGGAGAGAATCTGTGAAGAATTGGATGAAGCTAAAGCTGAAATTGGCAAGCTGAGAGGAGATCTGAAGTGCAAATCACAGTTGTTCCACAATCTGAAAA TATCTCATAATGAGCAACTCTTCCAACTCCAGGCGGCACAATCAAAAATCGAATCGCAAGCCCAAGAAATCAATGTAAAGCAAGAGGAAATTAAGGAGGC AAGAAATGAAGTAGAAAATCTTCAACGCAAGTTGAATGAAAAGGAGTCTGCTATCAGAGGACTGAGCTCAGTCAACGATAAACTCAGAGTTGATAATGAT GACAAGTTTCTTAAATGGGAAGAAGAGAAGAGGGAGTTGATGCTATCTCTGGACGAGGCCAATGAGAAAAACACAAATCAACATCAAAAGCTAAATGCAC TCCTGGCTGAGATCGGAAGTCTTAAGGGGCTTCTTTTAGCTTCTGAGAAGAAGCGTTTAGAAGCTGAGAAGCAAGTGAAAGAAGCTAAATCACAAAGGGA TAGGGATGATGTGGTAATGACATTGGAGGAAGAGAAGATGAAGGTTGAAGATAAACTAAAGTGGAAAGTTGAGCAGTTTAAGCATCTGGAAGAAGCACAT GAAAAGCTCCGATGTGAGTTCAAAGAAAGCAAAAAGGAGTGGCAGCTTGACAAGTCTACGTTGGTTGATGAGATTTGTAAACTGCAGTCAAGTTTAGATT CTCAGACCAGAATCTCAGAAGATCTCCAGAACCAGTTAAGGATGTGTAACCATGGGCTTGCAAATGAAGAGAGCCGGAGGAAGCAGCTGGATGTCGAGGT TGCTGAATTCAGAACACGTTTTGAGAATGTGTATACCGACTACCAGGATGCAAAGTCGCAATTGGAATGCTTGACGACAAAGAGGGACAATGAGATTGCT GATCTTAGACATTCCTTGGTTACAAAGGAGACGCATTGGAAAGAGATTGAATATGAGTCGAGAAAACTTGACCAAGATAATCGAGAACTCATGGAATCTC TTAAAGAACTTCGGGAAGCTCAGATTCATCAATCCGGAAACGGATCTACTCTAGTCAAACTTAAAAACAAGCTCAAAAGTGTGGAGCAGATACATCGCGA CTGTGCTGCAAATCTTAGAGCTAAAGAAGCTGAATGGAGTTCTGAGGTAGGGAAGCTAACTGCACAAGTTGCCGATTACCAGTCTGCCTTGGATCGTAGT GAAACTGTTGCAAGAAAACTTGAGCTCGAATTGGAAAATTGTCAATCAGCTCTAATGCAGTTGAATGTGCAGAAGGAAGAGGCTTCCATAGAATTATTGG TGTTGAAATCAGGAGTGAGTGAGGCTCAATCAAACATAGAAAAGGCTGAAGCTGATGAGGTGATCATCAATGGCAGAACAAGAGCTGTTGAAGTTTCTTG CTTGGTCAAACAGCTGGAGATGAAAGCTACTGCCTTGACTAAAGCACAGACCGATGTTGAAGAGGAACGTAGGAAGGTTGCATCTCTATCAAAGAGACTT GAGACAGTGGAACTTATTGAAGAGCAAATGCTTATAATGGAGAAAGAGGTGGCTCGGTCGAAGGAGATGCTGGAGGAATCATCCAGATGTCATTTCCAAT TTAAGGAGCAAGCTTTGCAGACAGAAAATGATCTGAGGCTGAAAATTAAAGCAGCCTGCGATGACTTGGACTTCGTAAATTCAGAATTGGTTGAGGAGCG TGCGAAGGTAGTTTCATTGTCAAGGAGTGCTGAGGCCGTAGACGGTGTAGAAGAGAAGCTGATCTACATGGAGAAAGAGCTGGAGAGGCATAAGCAGATG CTTGAAGAATCATACAATCATCGGAATCAACAAGAAGAGAAAGCTTTACAAACTGAGAAAGAGTTGCAGGAGATGATAAGACAACTATCGAATGCATTGG ATGAAACCAGTGTTGAATTGACAAAAGAGCGTGAGAAGGCAGCATCTCTCTCCCGGGGTATCAAGTCCATCACTGTTGGTGAAGAGCAGAAACTGGCGGT GTTACAGAAAGAAATTCAGAGACAAAAGGAAATGATTGAGGAAAATGGATTAAAGCAGCAGCAAAAGGAAAAAGGATTAAAGAAGGAACTCAAAGAAGCT CGTGATGGCTTAGATAGTTTGAGCTCTGAACTAGCGGTCAAAATGTGCGATGGGAATGCACTTGAATTTGAATTGTGGATATGGAAGGCTGTTGCTCAAC GTCTAAACGACGATCTTGAAGATAATCAAGCACTGAGGAAAGATTTAGAAGCTTCTCTTCTTTCACAAGTTGATGTTACAGAAACAATTAAGCAGGAGAA ATGTGCGCTTATTCATAAATTAGCACTGGCGAATGACACAACAGACAATCTGATGAAGCAGCATGAGAAACAAACCATGAGAGAGATAGACAAGGTCCTG GAGGATGTTGAAGAAGAAACATTGAGAAGAGAATTGGAAGGTGTGGTGTTCACACATATAATGGCAGAAAGAAGATATAAGGATGAGAAGGAGCATCTCT TACAGATATTGGAAGGTAAAGAGCAAAGAATAAATGACCTTTTGCAGCTGATAAGGAGTTCAGAACAAAACTTTAATCTTTCAATAATGTCTGTTTCATC AGAGATTAATCTGCTGCACGACAAGGCATGCGAGAAGATAGCTGCTGGCGAGATTCTAGCACAGTTGGAAGTAGAAGAGAAGATGCTGATGATTGGAGAG CTTGAAGATGACATCTCTTCTCTGCAGAGGAAACTGGAGGACACGTTGACAACTTCACAAGCATTGGTCGAGGATCTGAAGAGTGAGAAGAAAGGTTTAA CTGAAGATGTGACGAAGCTGACGGCTGAAAGAGAAAACTTGGTTAGTTTTATTGTGGGAGCTGGTAACAGAATTAGTGAGTTCTCGGCGGTGGACATGCA GCTGGTGCAAGTACTGGACAACATTGTTCAATCTGCTGAAGCAAAAGGAGATGATCTGAAAGAGAACAACGAAGCTCATCCTTGGAAACGATTCGGAGTT GCTGCTGGGGAAGAGAGATCACCATTCAAGGAGCTCATTAATAACTAG
AA sequence Show only first row Show all	>Lus10035943 pacid=23141255 polypeptide=Lus10035943 locus=Lus10035943.g ID=Lus10035943.BGIv1.0 annot-version=v1.0 MERICEELDEAKAEIGKLRGDLKCKSQLFHNLKISHNEQLFQLQAAQSKIESQAQEINVKQEEIKEARNEVENLQRKLNEKESAIRGLSSVNDKLRVDND DKFLKWEEEKRELMLSLDEANEKNTNQHQKLNALLAEIGSLKGLLLASEKKRLEAEKQVKEAKSQRDRDDVVMTLEEEKMKVEDKLKWKVEQFKHLEEAH EKLRCEFKESKKEWQLDKSTLVDEICKLQSSLDSQTRISEDLQNQLRMCNHGLANEESRRKQLDVEVAEFRTRFENVYTDYQDAKSQLECLTTKRDNEIA DLRHSLVTKETHWKEIEYESRKLDQDNRELMESLKELREAQIHQSGNGSTLVKLKNKLKSVEQIHRDCAANLRAKEAEWSSEVGKLTAQVADYQSALDRS ETVARKLELELENCQSALMQLNVQKEEASIELLVLKSGVSEAQSNIEKAEADEVIINGRTRAVEVSCLVKQLEMKATALTKAQTDVEEERRKVASLSKRL ETVELIEEQMLIMEKEVARSKEMLEESSRCHFQFKEQALQTENDLRLKIKAACDDLDFVNSELVEERAKVVSLSRSAEAVDGVEEKLIYMEKELERHKQM LEESYNHRNQQEEKALQTEKELQEMIRQLSNALDETSVELTKEREKAASLSRGIKSITVGEEQKLAVLQKEIQRQKEMIEENGLKQQQKEKGLKKELKEA RDGLDSLSSELAVKMCDGNALEFELWIWKAVAQRLNDDLEDNQALRKDLEASLLSQVDVTETIKQEKCALIHKLALANDTTDNLMKQHEKQTMREIDKVL EDVEEETLRRELEGVVFTHIMAERRYKDEKEHLLQILEGKEQRINDLLQLIRSSEQNFNLSIMSVSSEINLLHDKACEKIAAGEILAQLEVEEKMLMIGE LEDDISSLQRKLEDTLTTSQALVEDLKSEKKGLTEDVTKLTAERENLVSFIVGAGNRISEFSAVDMQLVQVLDNIVQSAEAKGDDLKENNEAHPWKRFGV AAGEERSPFKELINN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10035943 [exp]	0	1
AT5G42330			unknown protein		Lus10030749 [exp]	1.0	0.9702
AT5G66230			Chalcone-flavanone isomerase f...		Lus10014261 [exp]	3.5	0.9634
AT4G14310			Transducin/WD40 repeat-like su...		Lus10011802 [exp]	3.9	0.9602
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10001909 [exp]	4.6	0.9517
AT4G01730			DHHC-type zinc finger family p...		Lus10038029 [exp]	6.6	0.9583
AT5G12360			unknown protein		Lus10038810 [exp]	6.9	0.9524
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10021988 [exp]	10.5	0.9547
AT4G15140			unknown protein		Lus10010477 [exp]	11.0	0.9354
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10042527 [exp]	12.2	0.9492
AT4G02800			unknown protein		Lus10022037 [exp]	12.7	0.9405

Compare expression of checked genes

Lus10035943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.