Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22560 380 / 6e-116 Kinase interacting (KIP1-like) family protein (.1) AT1G58210 254 / 1e-69 EMB1674 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) AT1G09720 242 / 1e-66 Kinase interacting (KIP1-like) family protein (.1) AT5G10500 236 / 6e-65 Kinase interacting (KIP1-like) family protein (.1) AT3G22790 91 / 4e-18 Kinase interacting (KIP1-like) family protein (.1) AT1G03080 87 / 6e-17 kinase interacting (KIP1-like) family protein (.1) AT4G02710 83 / 8e-16 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 79 / 1e-14 kinase interacting (KIP1-like) family protein (.1) AT5G58320 73 / 6e-13 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) AT2G30500 70 / 5e-12 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025717 [exp] 1241 / 0 AT2G22560 497 / 6e-158 Kinase interacting (KIP1-like) family protein (.1) Lus10002655 [exp] 575 / 0 AT2G22560 511 / 9e-164 Kinase interacting (KIP1-like) family protein (.1) Lus10012730 [exp] 567 / 0 AT2G22560 430 / 9e-134 Kinase interacting (KIP1-like) family protein (.1) Lus10001866 [exp] 218 / 3e-59 AT1G58210 281 / 1e-80 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Lus10032844 [exp] 217 / 1e-58 AT1G58210 280 / 4e-80 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Lus10039359 [exp] 93 / 1e-18 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 86 / 2e-16 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 86 / 2e-16 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10042627 [exp] 78 / 3e-14 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011300 [exp] 475 / 7e-151 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.005G147300 [exp] 468 / 3e-148 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.002G106400 [exp] 218 / 3e-58 AT1G58210 702 / 0.0 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Potri.010G083300 [exp] 97 / 5e-20 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 94 / 2e-19 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.002G049600 [exp] 91 / 5e-18 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 90 / 8e-18 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.019G131000 [exp] 80 / 5e-15 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.013G158100 [exp] 78 / 2e-14 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.003G164200 [exp] 72 / 2e-13 AT1G03080 109 / 1e-26 kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [flax] [poplar] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10035944 pacid=23141138 polypeptide=Lus10035944 locus=Lus10035944.g ID=Lus10035944.BGIv1.0 annot-version=v1.0 ATGTACAAAACCAATTCACGAGCTACACTAATCGAGCCAACAAACAAGTCTCAACCAAGCCAACGAACGAGCCGTAATCGAACTTGGACGGGCGCCGCGA GGGCCGTCGGGCCTCCCGTTGCGGCCTCCAACGCCGCCGTCCTCATCGATACCTCTGACTTCGATCCAGGAGGCACGTCACGATTCCGTGAGGCACGTCT TTTCAATCTAAACGGTGTTGTGGATAGCCGTAGACCTAGCCTTATTGTGGAAAGAATGTTGCAAAGAGCGGCGAGTAACGCATATTCATGGTGGTGGGCA AGCCACATAAGAACCAAACAATCAAAATGGTTGGAGCAAAATCTCCAAGATATGGAAGAAAAGGTGCACAGTGTAATGACGCTAGTGTCAGAGGATGGAG ATTCATTTGCAAAGAGGGCAGAAATGTACTACCAAAAAAGACCAGAAATCATCAGCTTCGTTGAGGAGGCTTACAGAGCTTACAGGGCATTAGCCGAGCG TTATGATCATATCTCCACAGAGCTTCAGAATGCCAACAACACCATAGCATATGTTTTCCCTGAGCAAGTTCTACTAGCTATGGAGGATGAGGATGACCTT CCTTCTCCAAGGTTCTTCAAGAAAGCATCTGCAGATCATCTCCCTAAAGAAGAAATGGAAAGGAAGTTGGAAGAAATTGAGGAGATGAATGCAAGTGTTG AGGATCAAAGCACAAACCTTCAGACCAACTTCATGGAGGCAAAGTGTAATCTTGATCATCTCTATCAGAAAATGGAGAATCTAAAGCCAGACGAGGAGGT TCAGACTCCTCCTCCCGTGCAGCGGAAGAAAGCTCATAAGTTTGAATCACAGCCCTTTGTTAAAGGCAAAAACATTCGAAATGCTGTTGCTGAGTTTGAC AATTCAATCAAAAAAGACAAAGAGAAGAGTGAAAAGGAGTTGAAACAACAACAAGTAGCCGATGAGATTAGGCAAGCAAGAGAGGCTAGGAAGAAGGTCA AGAAGAAAGAGAAACCAAAGAAAGAAAAGAAAGTAGCAGATCAAGAATCTACACAAGTTGCAGAAGAAGAATCTACACAAGTTGCAGATCAAGAAGCAGC GAATAATGCTGATGTCAGGACAACAAAACTAGAAAACAAGGTTCCTCAAGTCCAGCAGCAGCAACAAGAACAAGAACAACAAGGACATGAAACTCAAGTT GAAGGAGGAGGAGAAGGAAGAAGAAATATTGATGTGAAGGCAGGAGAAGAAATTAGCCAGAGATCAAAGGAACAAGGAGAAAAATCAGACCATTCTAGTT CGCTTGGTGCTATGTTGGGGATTGATAATGCCAATATGAATGAAGAAAGAAAAGAAGAAAATCTTGGCAGCTTGTTGGGAGATGGTTTGGACGACAAAGG ATCTCAGTCTCTGAAGAAATATGACGTCTCTTCCGAGGAGTCTCATGATGAGAGTGCAGTAGCAAAACAAACATCTTTCAAGAAACTCGAAAAGCTTGGT AGTGGAACACAAGATAAGGTGGAAGCAGCTACAAGAACAGCAGTAGCAAATTCAACACTGGTTGATGCTACTGTTGAACAAAAACAAGGAATGAAGGTTG CAACAGATGATAGAGAAGACACACGAAGACAGGAAAATAAACAAGACGATGCATCATCAAACCAGCCTGTCTCCCTTGCTAATGCCTTGGACAATACCAA ACAGGAGGTGGATAATACCAAACAGGATCTTAGAAGCTTGTTGATGGATGATTCACAGAATGGAGTTCAACCCCCAGTAACACAGCTCAACTCTTTAGAG AACTCTAACATCGAGAAACCTATGGTGAAGCAGCAGGAATGTACAAAGGAATCTGAAAATCTTAGTGCTAGGACACAAGAGAATGTTGCCGCACCTGAAA ATCTTTGTGGTGATGTTTATGTTGAATCACAAGAAAATGCAGCAAGAAAAGATGCATCTGATCTTAGTCTCCAAGCACAACAAAATGGAGCTGATGTAGG TGACAACGAGGTTAATGTTATAGCAGAAGAAGAAAATGGAGCATCCACGCCAACTGTTGTTCATAGTGTTAAACCAGATAATAATGAGAGTGAAGATGAT GATGACGATGATGATGAAGACGATGAGCCAGACTGGAAGGAACTATTCTTGAAAGGCGTGGATAATAGAGAACAAGTTCTTCTTACAGAATACACCACCA TTCTTCGAAACTTCAAAGAAGTTCAAAAGAAGCTCTCTGAAGCAGAAACCAAAGGAGGTGATAGCCTGTTCTATATAACCGTTCAACTCAGAGAATTAAG GGCGGCCAATGCTAAGAAAGATGAACAGATTAGAGCTCTGCGTAAGAAACTCAGTCTCTTGCAAGCTGGAGATAATGAAGGCAAACCTGAATCACCATTC ACAGTGGCTGATATATTACAAGATATAAATCTGGATCTAGAAGATGGCATTTCACCAGTTGAAGAGAGATTCCGATCAAGCATCGATGAACTTTTGGAGC ACAACTTGGATTTTTGGCTAAGGTTTAGTACCACATTTCAACAGGTACAGCAATTTGAAACTGAGGTTAAAGACTTGCAATCTGAGTTGTCTGAGCTAGA GGATAAGCTGGGCAAGCACGATGGAAGCACCCATGGCAAGTACAGTCTGACATCAGATGCAAAGCCATTGTACAAGCATCTAAGAGAGATCCACACTGAG CTAACAGTCTGGTTAGACAAGGGTATGCTACTGAAAGATGAACTAAAAGGAAGGTTTTCATCTTTGTGTGAAATTCAGGACGAAATCACCATAGCTCTAA AAGAGAGTGCAGAAGATGAAGATTTCAATTTTACAAGCTACCAGGCTGCGAAATTTCAAGGTGAAGTTCTGAATATGAAACAAGAGAATAACAAAGTTGC AGATGAATTGCAGGCAGGATTGGATCATGTAACCTCCTTGCAACTTGAGGTTGACAGGACATTGGCTAAGTTGAACGAGGAATTCAAACTTTCTGGTTCT ACTAAGAACCGTCAAAACATCGAGCTTCAACACTCAGAAAGTAGATCTCGAGTTCCTTTGAGATCCTTCATTTTTGGAGTTAAACCAAAAAAGCAAAAGC ATTCAATTTTTTCAGCTGTCCATCCGGTACTTCAGAGGAAGTACAATGGTTTCAGATCAGGGCTAAATCTATAA
AA sequence Show only first row Show all	>Lus10035944 pacid=23141138 polypeptide=Lus10035944 locus=Lus10035944.g ID=Lus10035944.BGIv1.0 annot-version=v1.0 MYKTNSRATLIEPTNKSQPSQRTSRNRTWTGAARAVGPPVAASNAAVLIDTSDFDPGGTSRFREARLFNLNGVVDSRRPSLIVERMLQRAASNAYSWWWA SHIRTKQSKWLEQNLQDMEEKVHSVMTLVSEDGDSFAKRAEMYYQKRPEIISFVEEAYRAYRALAERYDHISTELQNANNTIAYVFPEQVLLAMEDEDDL PSPRFFKKASADHLPKEEMERKLEEIEEMNASVEDQSTNLQTNFMEAKCNLDHLYQKMENLKPDEEVQTPPPVQRKKAHKFESQPFVKGKNIRNAVAEFD NSIKKDKEKSEKELKQQQVADEIRQAREARKKVKKKEKPKKEKKVADQESTQVAEEESTQVADQEAANNADVRTTKLENKVPQVQQQQQEQEQQGHETQV EGGGEGRRNIDVKAGEEISQRSKEQGEKSDHSSSLGAMLGIDNANMNEERKEENLGSLLGDGLDDKGSQSLKKYDVSSEESHDESAVAKQTSFKKLEKLG SGTQDKVEAATRTAVANSTLVDATVEQKQGMKVATDDREDTRRQENKQDDASSNQPVSLANALDNTKQEVDNTKQDLRSLLMDDSQNGVQPPVTQLNSLE NSNIEKPMVKQQECTKESENLSARTQENVAAPENLCGDVYVESQENAARKDASDLSLQAQQNGADVGDNEVNVIAEEENGASTPTVVHSVKPDNNESEDD DDDDDEDDEPDWKELFLKGVDNREQVLLTEYTTILRNFKEVQKKLSEAETKGGDSLFYITVQLRELRAANAKKDEQIRALRKKLSLLQAGDNEGKPESPF TVADILQDINLDLEDGISPVEERFRSSIDELLEHNLDFWLRFSTTFQQVQQFETEVKDLQSELSELEDKLGKHDGSTHGKYSLTSDAKPLYKHLREIHTE LTVWLDKGMLLKDELKGRFSSLCEIQDEITIALKESAEDEDFNFTSYQAAKFQGEVLNMKQENNKVADELQAGLDHVTSLQLEVDRTLAKLNEEFKLSGS TKNRQNIELQHSESRSRVPLRSFIFGVKPKKQKHSIFSAVHPVLQRKYNGFRSGLNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10500			Kinase interacting (KIP1-like)...		Lus10035944 [exp]	0	1
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10010421 [exp]	5.9	0.9046
AT1G18910			zinc ion binding;zinc ion bind...		Lus10042190 [exp]	55.0	0.8992
AT3G22880		ARLIM15, ATDMC1	ARABIDOPSIS THALIANA DISRUPTIO...		Lus10039383 [exp]	77.6	0.9091
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041658 [exp]	95.1	0.9058
AT4G00720		ASKTHETA, ATSK3...	SHAGGY-LIKE PROTEIN KINASE THE...		Lus10036568 [exp]	95.8	0.9043
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10025045 [exp]	113.4	0.8993
					Lus10041686 [exp]	113.5	0.8929
AT5G56580		ANQ1, ATMKK6	ARABIDOPSIS THALIANA MAP KINAS...		Lus10012938 [exp]	158.1	0.8675
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10042561 [exp]	169.9	0.8828
AT1G32160			Protein of unknown function (D...		Lus10030993 [exp]	184.3	0.8688

Compare expression of checked genes

Lus10035944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.