Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22570 342 / 4e-120 NIC2, ATNIC1 A. THALIANA NICOTINAMIDASE 1, nicotinamidase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G147400 [exp] 373 / 3e-132 AT2G22570 350 / 3e-123 A. THALIANA NICOTINAMIDASE 1, nicotinamidase 1 (.1.2) Potri.007G116100 [exp] 368 / 2e-130 AT2G22570 337 / 4e-118 A. THALIANA NICOTINAMIDASE 1, nicotinamidase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00857 [flax] [poplar] Isochorismatase Isochorismatase family
Representative CDS sequence Show only first row Show all	>Lus10035945 pacid=23141117 polypeptide=Lus10035945 locus=Lus10035945.g ID=Lus10035945.BGIv1.0 annot-version=v1.0 ATGGTGTCTCCAGCGGGGATTGATTTACTCAAGAGTGAACTTCCCATTGAACAAGAAGCTCTTGTAGTCAACGGTGATATTAAAACTGGGCTTGTTATGG TCGACATCGTCAACGGTTTTTGCACTGTTGGTGCTGGTAACTTGGCTCCAAGGCAGCCTAACAAGCAAATATCAGAAATGGTTGAGGAATCCGCGAGTCT TGCCCGGATTTTCTGCGATAAGGAATTGCCTGTTTTCGCTTTCCTTGACTCCCACCATCCTGACGTTCCTGAGCCTCCTTATCCTTCTCACTGCATTGCT GGTACAGCTGAAGCAAACCTTGTTCCGGCTCTCCAGTGGTTAGAGAATGAGCCCAGCGCTACGCTTAGGCGTAAGGATTGCATTGATGGGTTCATTGGTA GTGTTGAGAAAGATGGATCCAATTTGTTTGTTGATTGGGTTGTAAGCAATGAAATCAAAGCTATACTGGTGGTGGGGATATGCACAGATATCTGCGTACT GGATTTTGTATGTTCAGTACTGTCCGCTAGGAATCGTGGTTTTCTTGATCCTTTAAGAGATGTGATTATTTATTCCGGTGGCTGCGCAACGTTTGATCTT CCACTTCATGTTGCTAGAGCTACCAAAGATGCAATAGCACATCCTCAGGAGCTGATGCATCACTTAGACCTTTACGTAGCAAAGGGAAGAGGAGCCAAGG TAGTATCTGACGTGAATTTTAGTTAG
AA sequence Show only first row Show all	>Lus10035945 pacid=23141117 polypeptide=Lus10035945 locus=Lus10035945.g ID=Lus10035945.BGIv1.0 annot-version=v1.0 MVSPAGIDLLKSELPIEQEALVVNGDIKTGLVMVDIVNGFCTVGAGNLAPRQPNKQISEMVEESASLARIFCDKELPVFAFLDSHHPDVPEPPYPSHCIA GTAEANLVPALQWLENEPSATLRRKDCIDGFIGSVEKDGSNLFVDWVVSNEIKAILVVGICTDICVLDFVCSVLSARNRGFLDPLRDVIIYSGGCATFDL PLHVARATKDAIAHPQELMHHLDLYVAKGRGAKVVSDVNFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22570		NIC2, ATNIC1	A. THALIANA NICOTINAMIDASE 1, ...		Lus10035945 [exp]	0	1
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10037085 [exp]	4.7	0.9501
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10032219 [exp]	5.5	0.9382
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027787 [exp]	5.7	0.9332
AT3G04970			DHHC-type zinc finger family p...		Lus10033823 [exp]	7.7	0.9387
AT2G36780			UDP-Glycosyltransferase superf...		Lus10003322 [exp]	9.4	0.9494
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	10.5	0.9438
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10018231 [exp]	11.6	0.9352
AT4G23895			Pleckstrin homology (PH) domai...		Lus10032387 [exp]	12.2	0.9250
AT3G04970			DHHC-type zinc finger family p...		Lus10018967 [exp]	14.5	0.9362
AT5G08560			transducin family protein / WD...		Lus10001046 [exp]	17.9	0.9333

Compare expression of checked genes

Lus10035945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.