Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65500 451 / 2e-146 U-box domain-containing protein kinase family protein (.1) AT5G57035 196 / 2e-52 U-box domain-containing protein kinase family protein (.1) AT2G45910 196 / 2e-52 U-box domain-containing protein kinase family protein (.1) AT5G61560 194 / 1e-51 U-box domain-containing protein kinase family protein (.1.2) AT3G49060 190 / 3e-50 U-box domain-containing protein kinase family protein (.1.2) AT5G61550 188 / 1e-49 U-box domain-containing protein kinase family protein (.1.2) AT5G51270 187 / 2e-49 U-box domain-containing protein kinase family protein (.1) AT4G25160 186 / 1e-48 U-box domain-containing protein kinase family protein (.1) AT2G19410 181 / 2e-47 U-box domain-containing protein kinase family protein (.1) AT5G26150 124 / 3e-29 protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025715 [exp] 1264 / 0 AT5G65500 655 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10036362 [exp] 204 / 2e-54 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10014772 [exp] 203 / 2e-54 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10016557 [exp] 202 / 3e-54 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1) Lus10027490 [exp] 195 / 5e-52 AT3G49060 514 / 2e-171 U-box domain-containing protein kinase family protein (.1.2) Lus10040825 [exp] 194 / 2e-51 AT2G45910 496 / 1e-163 U-box domain-containing protein kinase family protein (.1) Lus10036363 [exp] 192 / 2e-51 AT2G45910 528 / 9e-178 U-box domain-containing protein kinase family protein (.1) Lus10039245 [exp] 191 / 2e-50 AT3G49060 556 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10018835 [exp] 135 / 2e-32 AT2G45910 522 / 4e-174 U-box domain-containing protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011500 [exp] 485 / 5e-162 AT5G65500 575 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160300 [exp] 204 / 2e-55 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160200 [exp] 203 / 2e-54 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.014G084900 [exp] 203 / 2e-54 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.012G143100 [exp] 193 / 2e-51 AT3G49060 706 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Potri.001G239100 [exp] 189 / 4e-50 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.009G030400 [exp] 187 / 4e-49 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 184 / 4e-48 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.006G147000 [exp] 179 / 5e-47 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.006G078500 [exp] 122 / 3e-28 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10035947 pacid=23140974 polypeptide=Lus10035947 locus=Lus10035947.g ID=Lus10035947.BGIv1.0 annot-version=v1.0 ATGGATGCTCAAGTGGAGAGTAAGAGTAGTATTCGGAAAGTGTATGTTGCTGTGGGGAATGATAGGGATGAAGGATTGAAGACTCTTGATTGGGCTCTGA CAAAATGGAAATCAAACATCTCAACTCTGTTCATTCTCCATCTGCCTTTTCCAGATTTCTCCACCAATGTTGTCCACACCCTCTATGGGAAGCTGCCGGC GAATTCAATGAGCGAGGAGAAACTGCAAGTTGTGAGGAAGTACGAGGAGAAGAAAAACGAGAAGCTTGTGTCGGAGTACATAGGTTATTGCGCTGCCAAG GGAGTGAAAGCAAAAGTGGTGAAAGTGGAGAATACGGAAGAGGCAATTGAGAAGGTGATGGTGGATCTGATTTCAAAGCTCAGAGTGTCCACTCTTGTTA TCGGAATTTCATTTCTCAAGTCATCCCCTTCCTGGAAGAAAACGAGGAACACGATAGGAGCTGTGTTGTACATGGTGGAAAAGAGACCAAGGGGTTGCAA GATGTTCATAGTATGTGGTGGGAGATTAGTGAGGATGAGAGGAGGAGAAGGAGAGAAGGAGGATGATGAAGGAAATGCCATTCCATATTTGATGAATTGT ACCAGTAATGCTTCATCTTCATCATCATTATCATGGCTTGGAAGATTAGATGATGGAGATGCATTTGCAGGAGTTGTTGCTGATGGCTCTGAGATCATGG AGATGTATTTGCAGGAGTTGTTGCTCATGGCTCCTCCTTCTCCTCCTCCTAATCCTGATTTGGGTCAACAGCAGCTAGCTGAACTTCATGACCAAACTGA TCATCTTCTGCAACAGCTTTCCAATCCCAATCTGGTTGAATTGCAAACTAAAGAATTTGAATTTGATGTGAAATTTATGAAAAAGAGTGGTGCAGAAAAA ACAGAGATGGTGAGAAGCAAAATAAAAGAAGCTTGGAAAGCAATGGAGTTGAAGAGAGAAGAAGCGGAGGATAATGCTGAAAGATGTGCAAAAGCTGATT GGGCAATCTCACTTTGCAACTCCCGGGTTGCGGACCTGGAATCAAAGATTACAGAAGAGGCAATGATGCACAGCGAGATGTCGAAAAAGTTGGAAGCGGA CAGAGAACGATCTCAAGAGCTGAAAAGCGACATCGAGGAAACCAAAAACAAAGTGGATTCAAACATGGAGCTCCAATCTGAGCTCTCAAACAGACTCCAA CTCTCCGTAACGGCGAAATCCCATGCGGAGGTCCAACTTCAGAAGTCGGCGGAGGCAAGAGCTGAGGTGGTTAGAGAGATAGAAGAATTAAGGCTGCAGA GGGATGTTCTTCGCCGTAGGATTGACTTCTGCAAAGAGAAAGACGCCATTGGGATGGTGATGAACTCGGGCCTGCACAATATTAGTTATAGAGAGTACAC TGCTCAGGATATCCAATCAGCCACCGATGGCTTCTCCGATGACCTCAGATTGAAATCCGGCGGTGATGGGAGGAGCAATGTGTATCGTGGACGCATTAGT CACAAGACTGTTGCGGTCAAGTTATTCGGAGCTGAGCATGAATTGTCAAACGAAGCTGCGTTTTTGGGTCAGGTGAAGTTCCTGAACAACGTTAGGCACC CACATTTGGTTGCCCCGATGGGGTTCTGCACCAAGCTGCAATGCATCGTTTTCGAGTATATGCACCAAGGTAGCCTTAAGCACAATTTGCTGAATAGTAA TAGCAGCTCCCAATCCGACTCTGGTTCCCCGAATCAGACTCTCAAGTGGCACCACCGGATCCGAGTGGCTCATCAAGTTTGCTCCGTATTAGCTTTCCTC CACTCAGCTAAGCCCAGCCCTATCGTTCACGGCAAACTCTCAGTGTCCAAGATCCTTCTTGACCGAAATCTGGTTCCCAAGTTATGTGGGTTGAAACCAA CAACATGTTCTTCGTCAGATGCCCGGTCTGACATTCGGGCTCTTGGAGTCATCTTGCTTCATCTCTTGATGGGAAGAAAATGGGGGGAGCTGGTTGATGA TAGGATGAGTTGTGACAGGTCAGCTTTGGTTGAGGTGTTGGATGATGAGATGGATGGACCTTGGCCATTGGATATGGCTGATGAACTTGCTGGAATTGCA ATGAGGTGCTTGTCATTGTCCCGTTTGGCTGCAGCAGATTTGAGCATTGCTCAAGTGCTTCAAGAGCTGCAGGATTTGAGGATAAAGAGAGATGATCTGG ATGTTAAATTTGGGCGTCAGGTCAGCAGCACATCTTTCAGCAGAGCTTCTGAAAATGATGACGACACTTCTGCTGATATTCCTAGCTTCTTCATTTGCCC AATACTCAAGGATGTGATGGAGAATCCTCATGTAGCTGAAGATGGGTTTTCGTATGAGCTAGAAGCTATGGAGCAATGGTTACAGACAGGGCGGGATACC TCACCGATGACAAACTTAAGTCTTAACCACACCTTCTTGATCCCTAATCGCACTCTTCGTTCCCTCATTGCAGATTGGCATAGCAAGAGGAACCATGTGC CTTCATCATCTTGA
AA sequence Show only first row Show all	>Lus10035947 pacid=23140974 polypeptide=Lus10035947 locus=Lus10035947.g ID=Lus10035947.BGIv1.0 annot-version=v1.0 MDAQVESKSSIRKVYVAVGNDRDEGLKTLDWALTKWKSNISTLFILHLPFPDFSTNVVHTLYGKLPANSMSEEKLQVVRKYEEKKNEKLVSEYIGYCAAK GVKAKVVKVENTEEAIEKVMVDLISKLRVSTLVIGISFLKSSPSWKKTRNTIGAVLYMVEKRPRGCKMFIVCGGRLVRMRGGEGEKEDDEGNAIPYLMNC TSNASSSSSLSWLGRLDDGDAFAGVVADGSEIMEMYLQELLLMAPPSPPPNPDLGQQQLAELHDQTDHLLQQLSNPNLVELQTKEFEFDVKFMKKSGAEK TEMVRSKIKEAWKAMELKREEAEDNAERCAKADWAISLCNSRVADLESKITEEAMMHSEMSKKLEADRERSQELKSDIEETKNKVDSNMELQSELSNRLQ LSVTAKSHAEVQLQKSAEARAEVVREIEELRLQRDVLRRRIDFCKEKDAIGMVMNSGLHNISYREYTAQDIQSATDGFSDDLRLKSGGDGRSNVYRGRIS HKTVAVKLFGAEHELSNEAAFLGQVKFLNNVRHPHLVAPMGFCTKLQCIVFEYMHQGSLKHNLLNSNSSSQSDSGSPNQTLKWHHRIRVAHQVCSVLAFL HSAKPSPIVHGKLSVSKILLDRNLVPKLCGLKPTTCSSSDARSDIRALGVILLHLLMGRKWGELVDDRMSCDRSALVEVLDDEMDGPWPLDMADELAGIA MRCLSLSRLAAADLSIAQVLQELQDLRIKRDDLDVKFGRQVSSTSFSRASENDDDTSADIPSFFICPILKDVMENPHVAEDGFSYELEAMEQWLQTGRDT SPMTNLSLNHTFLIPNRTLRSLIADWHSKRNHVPSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65500			U-box domain-containing protei...		Lus10035947 [exp]	0	1
AT1G55760			BTB/POZ domain-containing prot...		Lus10027101 [exp]	1.4	0.8890
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Lus10021259 [exp]	1.4	0.8909
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10040099 [exp]	2.4	0.8841
AT3G05630		PLDP2, PDLZ2, P...	PHOSPHOLIPASE D ZETA 2, phosph...		Lus10020672 [exp]	2.4	0.8714
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020468 [exp]	3.0	0.8628
AT5G04460			RING/U-box superfamily protein...		Lus10037928 [exp]	3.2	0.8613
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10000513 [exp]	4.8	0.8430
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004745 [exp]	6.5	0.8574
AT5G04460			RING/U-box superfamily protein...		Lus10017455 [exp]	7.7	0.8492
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10017824 [exp]	7.7	0.8583

Compare expression of checked genes

Lus10035947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.