Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65520 135 / 6e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025714 [exp] 293 / 1e-101 AT5G65520 209 / 6e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012031 [exp] 85 / 4e-20 AT5G65520 145 / 9e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016283 [exp] 81 / 2e-18 AT5G65520 144 / 3e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G111300 [exp] 102 / 6e-27 AT5G65520 159 / 4e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035948 pacid=23141199 polypeptide=Lus10035948 locus=Lus10035948.g ID=Lus10035948.BGIv1.0 annot-version=v1.0 ATGGCGGCAACAGATGCCGCCTTACAAGTTGCGATCATCGCTCTCACCATCGCCGTGTTCGTCTCAATCCAGTACCTCTCGAAGCTGTTCATCTCCAAGC AAAGAGCAAGGAATCGCACAGCCGCCCAATCTAATCGCCACTTCATCCAAGGATCCCAGCTCCTCGCCCGTGCCAGATCCGCGTCCCAAAACTCATCACA GTCCCAGACCTTAGCCAAACAGGCCCTCGCGGAGGCCGAATCCGCCGTCTCCCTTTCCCCCAAAGATCCTGCCCCTCTCATCCTCAAGTCCATTGTCCTG GATTTCCTCGGCCACAAGGCCTCCGCGCTGAAGGCCCTCGATTCTGCGCTAACTCCGCCGCAAGGGAAAGCGCTTCAGGGAAAGGAACGAGGCGACGCGC TTGTCAAGAGGGCAGAGTTTAAGATCGCCGTGAATAAGCGCCGACGACTGGAGTCCGCCATGGAGGACTTGAAGGAGGCCATGGAGTGTGGCGGAGGCGG AGAGAAAGGGTATTGTTTGTTGGGCCAGTGTTATGAGTGGAAGGGGTTAAGAGGTGATGCTAAATGGGCTTATTTGGAGGCCTTGAAGACGCAGCCCACT TCTAAGGTCGCCCTTGAAGGCCTCGACAGATTGGGTTCATAA
AA sequence Show only first row Show all	>Lus10035948 pacid=23141199 polypeptide=Lus10035948 locus=Lus10035948.g ID=Lus10035948.BGIv1.0 annot-version=v1.0 MAATDAALQVAIIALTIAVFVSIQYLSKLFISKQRARNRTAAQSNRHFIQGSQLLARARSASQNSSQSQTLAKQALAEAESAVSLSPKDPAPLILKSIVL DFLGHKASALKALDSALTPPQGKALQGKERGDALVKRAEFKIAVNKRRRLESAMEDLKEAMECGGGGEKGYCLLGQCYEWKGLRGDAKWAYLEALKTQPT SKVALEGLDRLGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10035948 [exp]	0	1
AT4G28440			Nucleic acid-binding, OB-fold-...		Lus10013989 [exp]	5.1	0.8046
AT4G34630			unknown protein		Lus10028793 [exp]	5.5	0.7973
AT5G49210			unknown protein		Lus10043148 [exp]	6.7	0.7330
AT2G15980			Tetratricopeptide repeat (TPR)...		Lus10020712 [exp]	7.7	0.7735
AT3G10400		U11/U12-31K	U11/U12-31K, RNA recognition m...		Lus10038693 [exp]	8.2	0.7788
AT1G68220			Protein of unknown function (D...		Lus10043484 [exp]	8.5	0.7879
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008527 [exp]	9.8	0.7522
AT4G06634	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10011009 [exp]	11.4	0.7128
AT2G25720			unknown protein		Lus10032479 [exp]	16.5	0.7382
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10017051 [exp]	18.4	0.7276

Compare expression of checked genes

Lus10035948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.